Locus 4657

Sequence ID X_DroMel_CAF1
Location 12,176,531 – 12,176,631
Length 100
Max. P 0.500000
window7644

overview

Window 4

Location 12,176,531 – 12,176,631
Length 100
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -10.83
Consensus MFE -8.80
Energy contribution -8.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.81
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12176531 100 - 22224390
UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUGCCCACUAAUUCACUUGCCU----------------UCCAUCCCUUUUACUCCAUU
..............(((..(..(((((....((((((........)))))).)))))...)..)))..............----------------.................... (  -9.60)
>DroEre_CAF1 3574 100 - 1
UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUGCCCACUAAUUCACUUGCCU----------------UCCAUCCCUUUUACUCCCUU
..............(((..(..(((((....((((((........)))))).)))))...)..)))..............----------------.................... (  -9.60)
>DroAna_CAF1 12359 114 - 1
UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUUCCCACUAAUUCACUUCACAGACACACACACUGGCACACACAUCCUUUACCCGC--
..............((((.((..........((((((........)))))).(((((.......))))).......................)).))))...............-- ( -13.30)
>consensus
UAAUUACAUUUUACGUGUUCCUAUUAAUCUUGCUGAGUUUUUAGUUUCAGUUUUAGUUUUGCCCACUAAUUCACUUGCCU________________UCCAUCCCUUUUACUCCCUU
..............(((.....(((((....((((((........)))))).)))))......))).................................................. ( -8.80 =  -8.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:17 2006