Locus 4653

Sequence ID X_DroMel_CAF1
Location 12,169,515 – 12,169,614
Length 99
Max. P 0.998247
window7639

overview

Window 9

Location 12,169,515 – 12,169,614
Length 99
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 71.39
Mean single sequence MFE -34.46
Consensus MFE -24.37
Energy contribution -24.70
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.71
SVM decision value 3.05
SVM RNA-class probability 0.998247
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12169515 99 - 22224390
GGCGUGGCCAAAUCUUUUGGCAAAA------------GCCGGAGCGACCCACA----CCUCAGCCCCCUCAAAACGCAUUUGGCAUGCAUGUGUGUCAACGCUCUGGCCAAAACA-----
(...(((((((.....)))))....------------(((((((((...((((----(..(((((................))).))...)))))....)))))))))))...).----- ( -32.39)
>DroEre_CAF1 21885 87 - 1
------GCCAAAUCUUUUGGCAA-----------GUCGCCGGAGCGACCCACCGCCC-----------CCAAAACGCAUUUGGCAUGCAUGUGUGUCAACGCUCUGGCCAAGACA-----
------(((((.....)))))..-----------((((((((((((((.(((.((..-----------(((((.....)))))...))..))).)))...))))))))...))).----- ( -33.50)
>DroYak_CAF1 22484 120 - 1
GGCCUGGCCAAAUCUUUUGGCAAAAGCCGGAGACGGAGCAGGAGCGACCCUCAGCCUCCUUAGUCCCCACAAAACGCAUUCGGCAUGCAUGUGUGUCAACGCUCUGGCCAAGACAGCUGC
(((.(((((.....(((((((....)))))))..(((((((((((........).)))))..((...((((....((((.....))))...))))...)))))))))))).....))).. ( -37.50)
>consensus
GGC_UGGCCAAAUCUUUUGGCAAAA_________G__GCCGGAGCGACCCACAGCC_CCU_AG_CCCCACAAAACGCAUUUGGCAUGCAUGUGUGUCAACGCUCUGGCCAAGACA_____
......(((((.....)))))................(((((((((.............................((((.....)))).((.....)).)))))))))............ (-24.37 = -24.70 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:13 2006