Locus 4652

Sequence ID X_DroMel_CAF1
Location 12,165,995 – 12,166,089
Length 94
Max. P 0.890345
window7638

overview

Window 8

Location 12,165,995 – 12,166,089
Length 94
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -23.47
Consensus MFE -21.45
Energy contribution -21.23
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.32
Structure conservation index 0.91
SVM decision value 0.96
SVM RNA-class probability 0.890345
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12165995 94 - 22224390
UUUUCAAAGCUGACACUGUGCAAAGCAAACGAGAGAAAGCUUUCGCUAAGCAAAAAUCUCCCACAACCCC-AAAACCGGUUGUCUAGUGUAGUGA
.............(((((..(...((...((((((....))))))....))...........((((((..-......))))))...)..))))). ( -22.80)
>DroEre_CAF1 18403 93 - 1
UUUUCAAAGCUGACACUGUGCAAAGCAAACGAGAGAUAGCUUUCGCUAAGCAAAAAUCUCCCACAACCC--AAAACCGGUUGUCUAGUGUAGUGA
.............(((((..(.........(.(((((.((((.....))))....))))).)((((((.--......))))))...)..))))). ( -22.70)
>DroYak_CAF1 18909 94 - 1
UUUUCA-AGCUGACACUGCGCAAAGCAAACGAGAGACAGCUUUCGCAAAGCAAAAAUCUCCCACAACCCCAAAAACCGGUUGUCUAGUGUAGUGA
......-......((((((((...((...((((((....))))))....))...........((((((.........))))))...)))))))). ( -24.90)
>consensus
UUUUCAAAGCUGACACUGUGCAAAGCAAACGAGAGAAAGCUUUCGCUAAGCAAAAAUCUCCCACAACCCC_AAAACCGGUUGUCUAGUGUAGUGA
.............((((((((...((...((((((....))))))....))...........((((((.........))))))...)))))))). (-21.45 = -21.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:12 2006