Locus 4650

Sequence ID X_DroMel_CAF1
Location 12,156,333 – 12,156,424
Length 91
Max. P 0.960514
window7635

overview

Window 5

Location 12,156,333 – 12,156,424
Length 91
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 72.45
Mean single sequence MFE -28.23
Consensus MFE -20.36
Energy contribution -20.33
Covariance contribution -0.03
Combinations/Pair 1.22
Mean z-score -1.48
Structure conservation index 0.72
SVM decision value 1.51
SVM RNA-class probability 0.960514
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12156333 91 + 22224390
GAUUCCAGGCCAUAUCCGCCAUUGCGGUGGCGCAGGAUGGAGUCAUCAAUGUGGCCGAUCAAGGUGAGUUCAGCACAUUUAAA-----AGGAAUAU-----
.(((((.((((((((.((((((....))))))...((((....)))).))))))))......(.((....)).).........-----.)))))..----- ( -31.10)
>DroSec_CAF1 9637 91 + 1
GAUUCCAGGCCAUAUCCGCCAUUGCGGUGGCGCAAGAUGGAGUCAUCAAUGUGGCCGAUCAAGGUAAGUGCCUUCUAUAAUUU-----AUAACAAU-----
((((...((((((((.((((((....))))))...((((....)))).))))))))))))(((((....))))).........-----........----- ( -28.70)
>DroWil_CAF1 11328 91 + 1
GCUUCCAGGCCAUAUCGGCCAUAGCUGUGGCUCAGGAUGGUGUCAUCAAUGUGGCUGAUCAAGGUGAGUGUAAAACGAAAUCA-----AAUGAGCU-----
((((....(((..((((((((((...(((((.(......).)))))...))))))))))...)))..((.....)).......-----...)))).----- ( -26.20)
>DroYak_CAF1 9493 96 + 1
GAUUCCAGGCCAUAUCCGCCAUCGCGGUGGCGCAGGAUGGAGUCAUCAAUGUGGCUGAUCAAGGUGAGUUCCGUUCAUUUACU-----ACAAAUUUUAUAA
(((((((..((.....((((((....))))))..)).)))))))...((((..(((.((....)).)))..))))........-----............. ( -28.00)
>DroMoj_CAF1 16997 85 + 1
GCUUCCAGGCCAUCUCGGCCAUCGCAGUGGCCCAGGACGGUGUCAUCAAUGUGGCCGAUCAAGGUGAGUACAGCAA--------CUGAAUUA------U--
(((.....((((((((((((((....(((((((.....)).)))))....))))))))....)))).))..)))..--------........------.-- ( -26.90)
>DroPer_CAF1 21518 95 + 1
GCUUCCAGGCUAUCUCGGCCAUUGCCGUGGCCCAGGACGGCGUCAUCAAUGUGGCAGAUCAAGGUGAGUGGAUUUUAAAUGAUACUUAUCAAAU-U-----
((((((.(((((...((((....)))))))))..))).)))(((((....))))).......((((((((............))))))))....-.----- ( -28.50)
>consensus
GAUUCCAGGCCAUAUCCGCCAUUGCGGUGGCGCAGGAUGGAGUCAUCAAUGUGGCCGAUCAAGGUGAGUGCAGUACAUAUAAU_____ACAAAU_U_____
.......((((((((.((((((....))))))...((((....)))).))))))))............................................. (-20.36 = -20.33 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:10 2006