Locus 4647

Sequence ID X_DroMel_CAF1
Location 12,151,269 – 12,151,389
Length 120
Max. P 0.747787
window7632

overview

Window 2

Location 12,151,269 – 12,151,389
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.07
Mean single sequence MFE -35.95
Consensus MFE -31.80
Energy contribution -31.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.47
SVM RNA-class probability 0.747787
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12151269 120 - 22224390
UUCCCCACUUCCCCCACUUCCCCACAGCCAACAGCUUGCCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC
........................((((.....(((((....((((.(.((((...(((((((.......)))))))((((.....)))))))).).))))....)))))))))...... ( -34.60)
>DroSec_CAF1 4542 106 - 1
CCCGCCACUCCCCCGACCU--------------GGUUGUCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC
...............((((--------------((.((((((...((..((((...(((((((.......)))))))((((.....)))))))).)))))))).))))))(((....))) ( -38.70)
>DroSim_CAF1 6202 106 - 1
CCCGCCACUCCCCCGACCU--------------GGUUGUCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC
...............((((--------------((.((((((...((..((((...(((((((.......)))))))((((.....)))))))).)))))))).))))))(((....))) ( -38.70)
>DroYak_CAF1 4406 95 - 1
CCCACCACCACCA-A------------------------CCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC
.............-.------------------------.....((((((.(((.((((((((.......))))))))))).....(((((......)))))...))))))......... ( -31.80)
>consensus
CCCGCCACUCCCCCGACCU______________GGUUGUCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC
............................................((((((.(((.((((((((.......))))))))))).....(((((......)))))...))))))......... (-31.80 = -31.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:07 2006