Locus 4645

Sequence ID X_DroMel_CAF1
Location 12,142,656 – 12,142,757
Length 101
Max. P 0.575282
window7630

overview

Window 0

Location 12,142,656 – 12,142,757
Length 101
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 63.41
Mean single sequence MFE -30.69
Consensus MFE -16.50
Energy contribution -15.74
Covariance contribution -0.76
Combinations/Pair 1.21
Mean z-score -1.39
Structure conservation index 0.54
SVM decision value 0.08
SVM RNA-class probability 0.575282
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12142656 101 + 22224390
UACCCACAUCCACACCCAUAACCCCCUCGCCAUUGUUACCUUCUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGGG-----UGGUGGG-----U----GGUAGGAGAAAGG-
..((....(((.(((((((.(((((((((((.((((...........((......)).)))).)))))......)).)))-----).)))))-----)----)...)))....))- ( -35.70)
>DroSec_CAF1 15766 94 + 1
------CACCCACACCCAUAACCCCCUCGCCAUUGUUGCCUUCUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGGG-----UGGUGGG-----C----GACAG-AAAAUGG-
------(.(((((((((((.......(((((.((((.((................)).)))).))))).......)))))-----).)))))-----.----)....-.......- ( -31.93)
>DroEre_CAF1 15335 82 + 1
CUCCCACACCCACACCCACAUCCACA--CCCAUUGUUG-CUUCUAUUGCUCAUUCGCUGCA-GGGCGAUUAGUCGGUGGG-----UGGUGG-------------------------
.....................(((((--(((((((..(-((...(((((((..........-))))))).))))))))))-----).))))------------------------- ( -24.60)
>DroYak_CAF1 12360 87 + 1
UACUCAUACCCCCUC-------------UCCAGUUUUG-CUUCUAUUGCUUAUUCGCUGCAAGGGCGAUUAGUCGAUGGG-----UGGUGGG-----C----GGAAA-AGAAGGAU
........(((((..-------------.(((......-..(((((((.(((.(((((.....))))).))).)))))))-----))).)))-----.----))...-........ ( -22.40)
>DroAna_CAF1 16694 103 + 1
UGCUCUUUGCG-----------CCUUUCCCCUUUGUUG-CCUUUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGAAAAGGGGGGAGGGGAUAGAGUCAGAAAA-AAAAGGGG
.(((((...(.-----------(((..(((((((.(..-((...(((((((...........))))))).....))..))))))))..))).)..))))).......-........ ( -38.80)
>consensus
UACCCACACCCACACCCA_A_CCCCCUCCCCAUUGUUG_CUUCUAUUGCUCAUUCGCUGCAAGGGCGAUUAGUCGGUGGG_____UGGUGGG_____C____GAAAA_AAAAGGG_
.............................(((((.......(((((((((...(((((.....)))))..)).)))))))......)))))......................... (-16.50 = -15.74 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:05 2006