Locus 4644

Sequence ID X_DroMel_CAF1
Location 12,140,594 – 12,140,691
Length 97
Max. P 0.997325
window7629

overview

Window 9

Location 12,140,594 – 12,140,691
Length 97
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -32.68
Consensus MFE -19.97
Energy contribution -20.31
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 0.61
SVM decision value 2.84
SVM RNA-class probability 0.997325
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12140594 97 - 22224390
UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCACCGGGGAAAA----CUCGCACAGACACACACACAUGGAUAUAUGCCGGAAAAGC
..(((((..((((((((....))))))))............))))).((((......----.((.....))........((((....))))))))...... ( -29.54)
>DroEre_CAF1 13330 77 - 1
UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCG------------------------CACACACACAUGCAUGGCUGCCGGAAAAGC
.(((((((..(((((((....)))))))((.(.((......)).).)------------------------).............)))).)))........ ( -29.10)
>DroYak_CAF1 10204 100 - 1
UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGACGCAC-GAGGAAAAUUCGUGCACACACACACACACACAUAGGUGGAUGCCGAAAGAGC
.((((((((((((((((....)))))).................((((-(((.....)))))))..................)))))).))))........ ( -39.40)
>consensus
UGGCGCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCAC_G_GGAAAA______C_CACA_ACACACACACAUGGAUGGAUGCCGGAAAAGC
..(((((..((((((((....))))))))............)))))....................................................... (-19.97 = -20.31 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:04 2006