Locus 4642

Sequence ID X_DroMel_CAF1
Location 12,137,521 – 12,137,627
Length 106
Max. P 0.671401
window7626

overview

Window 6

Location 12,137,521 – 12,137,627
Length 106
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 80.62
Mean single sequence MFE -32.72
Consensus MFE -17.10
Energy contribution -17.73
Covariance contribution 0.62
Combinations/Pair 1.20
Mean z-score -2.39
Structure conservation index 0.52
SVM decision value 0.29
SVM RNA-class probability 0.671401
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12137521 106 - 22224390
AGAAAGC--GCUGGGAAAAGGGGUUGCAAC-CGAGCAACUCUCUGUGUUGGCGAC---AACCCUGCAUCCACCGCUGCACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA
(((((((--((((((....((((((((...-...)))))))).(((((((....)---)))..((((........))))......)))....))))))).))))))...... ( -36.00)
>DroSec_CAF1 10724 107 - 1
AGGAAGGCGGUUGGGAAAAGGGGUUGCCAC-CGAGCAACUCU----GUUGGCGACAACAACCCUGCAUCCAACCCUGCACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA
.((((((((((((((...(((((((((...-...)))))..(----((((....))))).))))...)))))))..((..................))).))))))...... ( -33.87)
>DroEre_CAF1 10483 89 - 1
AGAAGGC--GGCGGAA-AAGGGGUUGUCGC-CGAGGAACUCU----GUUGGCGAC---AACCCUGCACC------------ACCCACAAUAAUCCAGCGACUUUCUCCAGUA
((((((.--.(((((.-..(((((((((((-(((((....))----.))))))))---)))))).....------------...........))).))..))))))...... ( -33.71)
>DroYak_CAF1 7211 101 - 1
AGAAAGC--GGCGGAAAAAGGGGUUGCCACCCCAGGAACUCU----GUAGGCGAC---AACCCUGCACC--ACCCCACACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA
((((((.--.(((((....(((((....))))).((.....(----(((((.(..---..)))))))..--...))................))).))..))))))...... ( -27.30)
>consensus
AGAAAGC__GGCGGAAAAAGGGGUUGCCAC_CGAGCAACUCU____GUUGGCGAC___AACCCUGCACC__ACCCUGCACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA
((((((...((((((....((((((((.......))))))))....((.((.(.......))).))..........................))))))..))))))...... (-17.10 = -17.73 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:02 2006