Locus 4641

Sequence ID X_DroMel_CAF1
Location 12,129,393 – 12,129,485
Length 92
Max. P 0.574394
window7625

overview

Window 5

Location 12,129,393 – 12,129,485
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 82.80
Mean single sequence MFE -31.43
Consensus MFE -20.68
Energy contribution -19.85
Covariance contribution -0.83
Combinations/Pair 1.30
Mean z-score -1.87
Structure conservation index 0.66
SVM decision value 0.08
SVM RNA-class probability 0.574394
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12129393 92 - 22224390
AUAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGUGAGCAGCACUCGCUGUCCGAGCAAUCGGUCAUUCCGUCUAUAUA-CAAAACAACA-UUA
...(((((.....)))))......((((((((((...(((((....)))))((((....)))).)))))))))).....-..........-... ( -32.00)
>DroPse_CAF1 3927 94 - 1
AGAGGCACAUGAUGUGCUCGGAGCAGGCCGGGUGCGAGCAGCACUCGCUGUCCGAGCAGUCGGUCAUCCCAUCUGGGAACGGAUAGAACGACUG
....((((.....))))(((((.(((..(((((((.....))))))))))))))).(((((((((.((((....))))...)))....)))))) ( -40.10)
>DroSec_CAF1 4088 92 - 1
AUAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGUGAGCAGCACUCGCUGUCAGAGCAAUCGGUCAUUCCAUCUAUAUA-AAAUACAACA-UUA
...(((((.....)))))......((..(((((((((.((((....)))))))((....))...))))))..)).....-..........-... ( -22.70)
>DroSim_CAF1 4059 92 - 1
AUAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGUGAGCAGCACUCGCUGUCCGAGCAAUCGGUCAUUCCAUCUAUAUA-AAAUAGAACA-UUA
...(((((.....)))))((.....)).((((((...(((((....)))))((((....)))).)))))).(((((...-..)))))...-... ( -27.80)
>DroMoj_CAF1 4490 91 - 1
AGAGACACAUAAUGUGCUCGGAGCAGGCUGGAUGCGAACAGCAUUCGCUGUCUGAACAAUCGGUCAUACCAUCUGCGCAUGAAUAGAGU---UA
.(((.(((.....))))))...(((((.(((..(((((.....)))))((.((((....)))).))..)))))))).............---.. ( -25.90)
>DroPer_CAF1 191 94 - 1
AGAGGCACAUGAUGUGCUCGGAGCAGGCCGGGUGCGAGCAGCACUCGCUGUCCGAGCAGUCGGUCAUCCCAUCUGGGAACGGAUAGAACGACUG
....((((.....))))(((((.(((..(((((((.....))))))))))))))).(((((((((.((((....))))...)))....)))))) ( -40.10)
>consensus
AGAGGCACAUUAUGUGCUCCGAGCAGGCGGGAUGCGAGCAGCACUCGCUGUCCGAGCAAUCGGUCAUUCCAUCUAUAUA_GAAUAGAACA_UUA
...(((((.....)))))(((......)))((((.(((((((....)))))((((....))))...)).))))..................... (-20.68 = -19.85 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:01 2006