Locus 4640

Sequence ID X_DroMel_CAF1
Location 12,128,399 – 12,128,510
Length 111
Max. P 0.729893
window7624

overview

Window 4

Location 12,128,399 – 12,128,510
Length 111
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 74.89
Mean single sequence MFE -33.84
Consensus MFE -17.40
Energy contribution -19.44
Covariance contribution 2.04
Combinations/Pair 1.23
Mean z-score -1.82
Structure conservation index 0.51
SVM decision value 0.42
SVM RNA-class probability 0.729893
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12128399 111 + 22224390
UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCC-UCUUUUUUUUUUUUACCAUCCAAAUGGUGUGUAAGGGCCAAAA------AAGGGGGAGGGCGUUGCUGCUACCUUACCC
........(.(....))((((.((((((((.(((((((-((((((((.(((((((((((.....)))).)))))))..))))------))))))))))).))..)))))).))))... ( -37.80)
>DroPse_CAF1 3066 93 + 1
UUUAACAUAACGGAAGCUGGGUUAGCAGGGCUCUAUAGGGACCG-----CUCCACCA--GUAGCGG--UGCCAAUGCCAA----------------UGCCAGUGCCAGUACCGUACCU
.........((((..(((((....(((.(((......((.((((-----((.(....--).)))))--).))...)))..----------------))).....))))).)))).... ( -31.30)
>DroSec_CAF1 3134 105 + 1
UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCU-UCUUU------UUUACCAUCGAAAUGGUGUGUAAGGGCCAAAA------AGGAAGGAGGGCGUUGCUGCUACCUUACCC
........(.(....))((((.((((((((.(((((((-(((((------((((((((....)))))(.((....)))))))------))))))))))).))..)))))).))))... ( -32.30)
>DroSim_CAF1 3113 106 + 1
UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCU-UCUUU-----UUUUACCAUCGAAAUGGUGUGUAAGGGCCAAAA------AGGAAGGAGGGCGUUGCUGCUACCUUACCC
........(.(....))((((.((((((((.(((((((-(((((-----(((((((((....))))))..........))))------))))))))))).))..)))))).))))... ( -32.40)
>DroEre_CAF1 2792 110 + 1
UUUAACAUUCCGGAAGCUGAGUUAGCAAGCCCCUUUCU-UCUU-------UUUACCAUCGAAAUGGUGUGUAAGGCAAAAAAAAAAGAAGGGAGGCGGGCGUUGCUGCUACCUUACCC
...........(((((...(((.(((((((((((..((-((((-------((((((((....))))).((.....))....)))))))))..))..)))).))))))))..))).)). ( -35.40)
>consensus
UUUAACAUGCCGGAAGCUGAGUUAGCAGGCCCCUUUCU_UCUUU______UUUACCAUCGAAAUGGUGUGUAAGGGCCAAAA______AGGAAGGAGGGCGUUGCUGCUACCUUACCC
...........(((((...(((.((((((((((((((...............((((((....)))))).((....)).............))))).)))).))))))))..))).)). (-17.40 = -19.44 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:00 2006