| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,127,017 – 12,127,113 |
| Length | 96 |
| Max. P | 0.942090 |
| Location | 12,127,017 – 12,127,113 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.09 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -10.42 |
| Energy contribution | -11.53 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.942090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12127017 96 - 22224390 AUUUCUAGCUAAAAAGAUGAU-GUAAAAAUGGAACUAUCAACCAAUAACUAUAUUUGGUUGAACAGGCAAGAAAUGUCUAUAUUAAAUAAGCUCAAA ......((((.......((((-(((............((((((((.........))))))))...((((.....)))))))))))....)))).... ( -16.20) >DroSec_CAF1 1801 81 - 1 AUUUCUAGCUAAAAAGAUGAUGGUAAAAAUGGGACUAUCAACCAAUAACUAUAUUUAGUUGAGCAGGAAAGAA----------------AGCUCAAA .(((((.(((.......(((((((.........))))))).....((((((....))))))))).)))))...----------------........ ( -16.60) >DroSim_CAF1 1776 81 - 1 AUUUCUAGCUAAAAAUAUGAAGGUAAAAAUGAGACUAUCAACCAAUAACUAUAUAUAGUUGAGCAGGAAAGAA----------------AGCUUAAA .(((((.(((...........(((.....(((.....))))))..((((((....))))))))).)))))...----------------........ ( -12.50) >consensus AUUUCUAGCUAAAAAGAUGAUGGUAAAAAUGGGACUAUCAACCAAUAACUAUAUUUAGUUGAGCAGGAAAGAA________________AGCUCAAA .(((((.(((.......(((((((.........))))))).....((((((....))))))))).)))))........................... (-10.42 = -11.53 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:57 2006