Locus 4637

Sequence ID X_DroMel_CAF1
Location 12,118,689 – 12,118,779
Length 90
Max. P 0.570283
window7620

overview

Window 0

Location 12,118,689 – 12,118,779
Length 90
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 85.11
Mean single sequence MFE -28.07
Consensus MFE -21.09
Energy contribution -22.76
Covariance contribution 1.67
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.570283
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12118689 90 + 22224390
ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCC------GGCCAUAGUUAUCGAUAAACGAUAGCCGGGAGGGGUCCUUUUUUUC
.(((.(((((((((((.......)))....(((........)))------)))......(((((.....)))))))))).)))............. ( -28.80)
>DroEre_CAF1 42000 90 + 1
ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCC------GGCCAUAGUUAUCGAUAAACGAUAGCCGGGAGGGGUCCUUUUUUUC
.(((.(((((((((((.......)))....(((........)))------)))......(((((.....)))))))))).)))............. ( -28.80)
>DroAna_CAF1 11283 88 + 1
ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCCAUGGCUGGCCAUGGUUAUCGAUAAACGAUAGCCC-------UCCCC-CAUCC
......((((((((((.......)))..(((((........))))))))..)))).((((((((.....)))))))).-------.....-..... ( -26.60)
>consensus
ACCUGCUGGCGCCGCAUUCCCACUGCCAAUGGCCAUAAAUCGCC______GGCCAUAGUUAUCGAUAAACGAUAGCCGGGAGGGGUCCUUUUUUUC
.(((.(((((...(((.......)))..((((((................))))))...(((((.....)))))))))).)))............. (-21.09 = -22.76 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:56 2006