| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,115,251 – 12,115,348 |
| Length | 97 |
| Max. P | 0.695786 |
| Location | 12,115,251 – 12,115,348 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 83.83 |
| Mean single sequence MFE | -23.89 |
| Consensus MFE | -18.03 |
| Energy contribution | -18.37 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12115251 97 - 22224390 UGAAU------GUAUGAUGGCAACGGGAUGGCAAAUAAAAGCUGUACGGAAUAAGCCCCAUGGGGUCAUUGCAGCAGUUAUAUAUAGCACAGCAAGUGCAAUA ...((------(((((((.((((((..(((((........))))).))......((((....))))..))))....))))))))).((((.....)))).... ( -27.70) >DroSim_CAF1 9488 103 - 1 UGUAUAUCCAAGUAUAUAUAGAACGGAAUGGCAAAUAAAAGCUGUACGGAAUAAGCCCCAUGGGGUCAUUGCAGCAGUUAUAUAUAGCACAGUAAGUGCAAUA (((...(((...............)))...))).((((..((((((..(.....((((....)))))..))))))..)))).....((((.....)))).... ( -22.66) >DroEre_CAF1 38889 89 - 1 U--------------AUAUAGAACGGGAGGGCAAAUAAAAGCUGUACGGAAUAAGCCCCAUGGGGUCAUUGCAGCAGUUAUAUAUAGCCCAGUAAGUGCAAUA .--------------.............((((..((((..((((((..(.....((((....)))))..))))))..)))).....))))............. ( -21.30) >consensus UG_AU______GUAUAUAUAGAACGGGAUGGCAAAUAAAAGCUGUACGGAAUAAGCCCCAUGGGGUCAUUGCAGCAGUUAUAUAUAGCACAGUAAGUGCAAUA ..................................((((..((((((..(.....((((....)))))..))))))..)))).....((((.....)))).... (-18.03 = -18.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:55 2006