| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,109,422 – 12,109,537 |
| Length | 115 |
| Max. P | 0.746689 |
| Location | 12,109,422 – 12,109,537 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 83.43 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -19.07 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12109422 115 + 22224390 UUUUGAGUCUAACCCAAUUCUGGGCCAACUUUCGAAAGUUGCCAACUCAAGAAUUGUUAAUUCUCUUUAAGCUGGGACCACGCCC-CCUUCCCCC-CCCCCUUAGCCAGCACUUUCC ((((((((....((((....)))).((((((....))))))...))))))))..................(((((..........-.........-.........)))))....... ( -21.89) >DroSec_CAF1 21632 103 + 1 UUUUGAGUCUAACCCAAUUCUGGGCCAACUUUCGAAAGUUGCCAACUCAAGAAUUGUUAAUUCUCUUUAAGCUGGGACCACGCCC-CCUUC-------------GCCAGCACUUACC ((((((((....((((....)))).((((((....))))))...))))))))..................(((((((........-...))-------------.)))))....... ( -23.60) >DroEre_CAF1 33149 104 + 1 UUUUGAGUCUAACCCAAUUCUGGGCAAACUUUCGAAAGUUGCCAACUCAAGAAUUGUUAAUUCUCUUUAAGCUGGGACCU-------CCUCCCC------CCUGGCCAGCACUGUCC ....(((.......(((((((.(((((.(((....))))))))......)))))))......))).....(((((..((.-------.......------...)))))))....... ( -23.92) >DroYak_CAF1 34381 116 + 1 UUUUGAGUCUAACCCAAUUCUGGGCCAACUUUCGAAAGUUGCCAACUCAAGAAUUGUUAAUUCUCUUUAAGCUGGGACCACGCCUUCCCUCCCCC-UCCGCCUUGCCGGCAUUUUCC ((((((((....((((....)))).((((((....))))))...)))))))).....................((((........))))......-...(((.....)))....... ( -24.60) >DroAna_CAF1 1133 109 + 1 UCUCGAGUCUAACCCAAUUCUG-GCCAACUUUCGAAAGUUGCCAACUCAAGAAUUGUUAAUUCUCUUUAAGCCGGGACCACGCCC-CCAUCGCCCAACCGUCUUACCG------CCC ....(((.......((((((((-((.(((((....))))))))......)))))))......)))..((((.(((......((..-.....))....))).))))...------... ( -19.62) >consensus UUUUGAGUCUAACCCAAUUCUGGGCCAACUUUCGAAAGUUGCCAACUCAAGAAUUGUUAAUUCUCUUUAAGCUGGGACCACGCCC_CCCUCCCCC__CC_CCUUGCCAGCACUUUCC ....(((.......(((((((.(((.(((((....))))))))......)))))))......))).....(((((..............................)))))....... (-19.07 = -19.27 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:52 2006