| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,104,812 – 12,104,912 |
| Length | 100 |
| Max. P | 0.999974 |
| Location | 12,104,812 – 12,104,912 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 65.77 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -16.17 |
| Energy contribution | -16.42 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.69 |
| Structure conservation index | 0.62 |
| SVM decision value | 5.11 |
| SVM RNA-class probability | 0.999974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12104812 100 - 22224390 CCACACACCGCCCAGCAACGCUACUUUCCACCACCACUACCAUGACACUCGACGAAAGUUGUGCACACGCAAAAUGGAGUGGUGCCAAAAGAGCGCACAA ..................((((.((((....(((((((.((((......((((....))))(((....)))..)))))))))))...))))))))..... ( -30.00) >DroSec_CAF1 16936 99 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGACACUCGACGAAAGUUGUGCACACGCAU-AUGGAGUGGUGCAAAAAGAGCGCACAA .............................................((((((((....)))((((....))))-...)))))((((.......)))).... ( -19.10) >DroEre_CAF1 28502 96 - 1 CUG----CCCCCACCCUCCUCCCCUUGCCACCACCACUACCAUGACACUCGACGAAAGUUGUGCACACGCAAUAUGGAGUGGUGCAAUAAGAGCGCACAA ...----...........(((...((((....((((((.(((((.....((((....))))(((....))).)))))))))))))))...)))....... ( -25.90) >DroYak_CAF1 30193 88 - 1 -------CCCCAACUUUCCACC----ACCACCGCCACUACCAUGACACUCGACGAAAGUUGUGCACACGCAAUAUGGAGUGGUGCAAAAAAGGCGGA-AA -------........((((.((----.....(((((((.(((((.....((((....))))(((....))).)))))))))))).......)).)))-). ( -29.90) >consensus _______CCCCCAC_CUCC_CC_____CCACCACCACUACCAUGACACUCGACGAAAGUUGUGCACACGCAAUAUGGAGUGGUGCAAAAAGAGCGCACAA .............................................((((((((....))).(((....))).....)))))((((.......)))).... (-16.17 = -16.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:48 2006