| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,101,638 – 12,101,757 |
| Length | 119 |
| Max. P | 0.955369 |
| Location | 12,101,638 – 12,101,757 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.40 |
| Mean single sequence MFE | -35.33 |
| Consensus MFE | -31.99 |
| Energy contribution | -32.05 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.955369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12101638 119 + 22224390 ACACACACCCCACUUAGUUGCCAUUUUUAGAUCAUUUACCUUACGGCUUAGUCGCGAACUUGCAAUUUGUUGAGGGUCUUAAGUGGGAGAGAAAUGUGGCAAUAAAAAUGGGGG-GAAAA .......(((((....((((((((((((...(((((((((((.((((..(((.(((....))).))).)))))))))...))))))...))))..)))))))).....))))).-..... ( -33.80) >DroSec_CAF1 13824 117 + 1 ACACACACCCCACUUAGUUGCCAUUUUUAGAUCAUUUACCUUACGGCUUAGUCGCGAACUUGCAAUUUGUUGAGGGUCUUAAGUGGGAGAGAAAUGUGGCAAUAAAA-U-GGGG-GAAAA .......(((((.((.((((((((((((...(((((((((((.((((..(((.(((....))).))).)))))))))...))))))...))))..)))))))).)).-)-))))-..... ( -35.60) >DroEre_CAF1 25420 116 + 1 --ACACACCCCACUUAGUUGCCAUUUUUAGAUCAUUUACCUUGCGGCUUAGUCGCGAACUUGCAAUUCGUUGAGGGUCUUAAGUGGGCGAAAAAUGUGGCAAUAAAA-UGGGGG-GAAGA --.....(((((.((.((((((((((((...(((((((..(((((((...)))))))(((..(((....)))..)))..)))))))...))))..)))))))).)).-))))).-..... ( -36.70) >DroYak_CAF1 25916 119 + 1 ACACACACCCCACUUAGUUGCCAUUUUUAGAUCAUUUACCUCACGACUUAGUCGCGAACUUGCAAUUUGUUGAGGGUCCUAAGUGGGAGAAAAAUGUGGCAAUAAAA-UGGGGGCGAAAA .......(((((.((.((((((((((((...((((((((((((.(((...)))(((....))).......)))))....)))))))...))))..)))))))).)).-)))))....... ( -35.20) >consensus ACACACACCCCACUUAGUUGCCAUUUUUAGAUCAUUUACCUUACGGCUUAGUCGCGAACUUGCAAUUUGUUGAGGGUCUUAAGUGGGAGAAAAAUGUGGCAAUAAAA_UGGGGG_GAAAA .......(((((....((((((((((((...(((((((((((.((((..(((.(((....))).))).)))))))))...))))))...))))..)))))))).....)))))....... (-31.99 = -32.05 + 0.06)
| Location | 12,101,638 – 12,101,757 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.40 |
| Mean single sequence MFE | -31.85 |
| Consensus MFE | -24.15 |
| Energy contribution | -24.03 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12101638 119 - 22224390 UUUUC-CCCCCAUUUUUAUUGCCACAUUUCUCUCCCACUUAAGACCCUCAACAAAUUGCAAGUUCGCGACUAAGCCGUAAGGUAAAUGAUCUAAAAAUGGCAACUAAGUGGGGUGUGUGU .....-.((((((((...((((((...............................((((......))))....(((....)))..............))))))..))))))))....... ( -27.70) >DroSec_CAF1 13824 117 - 1 UUUUC-CCCC-A-UUUUAUUGCCACAUUUCUCUCCCACUUAAGACCCUCAACAAAUUGCAAGUUCGCGACUAAGCCGUAAGGUAAAUGAUCUAAAAAUGGCAACUAAGUGGGGUGUGUGU .....-((((-(-(((..((((((...............................((((......))))....(((....)))..............))))))..))))))))....... ( -29.00) >DroEre_CAF1 25420 116 - 1 UCUUC-CCCCCA-UUUUAUUGCCACAUUUUUCGCCCACUUAAGACCCUCAACGAAUUGCAAGUUCGCGACUAAGCCGCAAGGUAAAUGAUCUAAAAAUGGCAACUAAGUGGGGUGUGU-- .....-.(((((-(((..((((((......((((..((((..((..(.....)..))..))))..))))....(((....)))..............))))))..)))))))).....-- ( -32.70) >DroYak_CAF1 25916 119 - 1 UUUUCGCCCCCA-UUUUAUUGCCACAUUUUUCUCCCACUUAGGACCCUCAACAAAUUGCAAGUUCGCGACUAAGUCGUGAGGUAAAUGAUCUAAAAAUGGCAACUAAGUGGGGUGUGUGU ....((((((((-(((..(((((((((((.(((((.(((((((.....)......((((......)))))))))).).)))).))))).........))))))..)))))))).)))... ( -38.00) >consensus UUUUC_CCCCCA_UUUUAUUGCCACAUUUCUCUCCCACUUAAGACCCUCAACAAAUUGCAAGUUCGCGACUAAGCCGUAAGGUAAAUGAUCUAAAAAUGGCAACUAAGUGGGGUGUGUGU ......................(((((....(.(((((((((((...(((.....((((......))))....(((....)))...))))))......(....)))))))))).))))). (-24.15 = -24.03 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:48 2006