| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,360,870 – 1,360,965 |
| Length | 95 |
| Max. P | 0.778511 |
| Location | 1,360,870 – 1,360,965 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 83.61 |
| Mean single sequence MFE | -34.43 |
| Consensus MFE | -26.47 |
| Energy contribution | -27.03 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1360870 95 + 22224390 ----------UUGGCCCUCCGCUUUGCGUAGCCCCUGGUUUGCUGGUUUGGCUUAAACUGUGUUUUGACACUUAGCUGCCUGGCUGUCAAUAAGCGGGGGUGGAA ----------((.((((.((((((...((((((...(((..(((((((((...))))))((((....))))..))).))).))))).)...)))))))))).)). ( -36.20) >DroSec_CAF1 21088 95 + 1 ----------UUGGCCCUCCGCUUUGCGUAGCCCCUGGUUUGCUGGUUUGCCUUAAAUUGUGUUUUGACACUUAGCUGCCUGGCUGUCAAUAAGCGGGGGUGGAA ----------((.((((.((((((...((((((...(((..(((((....)).......((((....))))..))).))).))))).)...)))))))))).)). ( -36.00) >DroEre_CAF1 21564 97 + 1 UGGUUGUUGGUUGGCUCGCCGCUUGGCGUAGCCCCUGG--------UUUGGCUUAAACUGUGUUUUGACACUUAGCUGCCUGGCUGUCAAUAGGCGGGGUUGGAA ........((..((((((((....)))).))))))...--------((..(((......((((....))))....(((((((........))))))))))..)). ( -31.10) >consensus __________UUGGCCCUCCGCUUUGCGUAGCCCCUGGUUUGCUGGUUUGGCUUAAACUGUGUUUUGACACUUAGCUGCCUGGCUGUCAAUAAGCGGGGGUGGAA ..........((.((((.((((((...((((((...(((..........((((......((((....))))..))))))).))))).)...)))))))))).)). (-26.47 = -27.03 + 0.56)
| Location | 1,360,870 – 1,360,965 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.61 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -17.84 |
| Energy contribution | -17.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1360870 95 - 22224390 UUCCACCCCCGCUUAUUGACAGCCAGGCAGCUAAGUGUCAAAACACAGUUUAAGCCAAACCAGCAAACCAGGGGCUACGCAAAGCGGAGGGCCAA---------- .....(((((((((..((..((((.(((((((..((((....))))))))...)))...((.........))))))...)))))))).)))....---------- ( -29.50) >DroSec_CAF1 21088 95 - 1 UUCCACCCCCGCUUAUUGACAGCCAGGCAGCUAAGUGUCAAAACACAAUUUAAGGCAAACCAGCAAACCAGGGGCUACGCAAAGCGGAGGGCCAA---------- .....(((((((((..((..((((.((..(((..((((....)))).......((....)))))...))...))))...)))))))).)))....---------- ( -28.80) >DroEre_CAF1 21564 97 - 1 UUCCAACCCCGCCUAUUGACAGCCAGGCAGCUAAGUGUCAAAACACAGUUUAAGCCAAA--------CCAGGGGCUACGCCAAGCGGCGAGCCAACCAACAACCA ........((((((..........))))......((((....)))).............--------...))((((.((((....))))))))............ ( -23.90) >consensus UUCCACCCCCGCUUAUUGACAGCCAGGCAGCUAAGUGUCAAAACACAGUUUAAGCCAAACCAGCAAACCAGGGGCUACGCAAAGCGGAGGGCCAA__________ ........((((((..........))))......((((....))))........................))((((.(((...)))...))))............ (-17.84 = -17.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:08 2006