Locus 4625

Sequence ID X_DroMel_CAF1
Location 12,094,513 – 12,094,612
Length 99
Max. P 0.983941
window7600

overview

Window 0

Location 12,094,513 – 12,094,612
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 91.41
Mean single sequence MFE -35.25
Consensus MFE -30.98
Energy contribution -31.73
Covariance contribution 0.75
Combinations/Pair 1.06
Mean z-score -2.54
Structure conservation index 0.88
SVM decision value 1.96
SVM RNA-class probability 0.983941
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12094513 99 + 22224390
GGCAGUUCGGGAAGUGGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCUCAAGGUGUAGUUUCCCG
.......((((((((.....((((((.((((((.((((((((.(((((((.....)))))))..)))))))).)))))))).)))).....)))))))) ( -35.30)
>DroSec_CAF1 7513 99 + 1
GGCAGUUCGGGAAGUUGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCCCAAGGUGUAGUUUCCCG
.......((((((..((...(((((.(((((((.((((((((.(((((((.....)))))))..)))))))).))))))).)))))...))..)))))) ( -38.50)
>DroEre_CAF1 18556 99 + 1
GGCAGUUCGGGAAGUGGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCCCAAGGUGUAGUUUCCCG
.......((((((((.....(((((.(((((((.((((((((.(((((((.....)))))))..)))))))).))))))).))))).....)))))))) ( -37.30)
>DroYak_CAF1 19062 88 + 1
GGCAGUUCGUGAAGUGGUUAUUUGGCUAUUUGUCAUGUGGCCAUGUCG-----------AUGGAGGUUGCGCCAUAAGUGGCCAAGGUGUAGUUUCCCG
......(((....((((((((.((((.....)))).))))))))..))-----------).(((..(((((((............)))))))..))).. ( -29.90)
>consensus
GGCAGUUCGGGAAGUGGUUAUUUGGCUAUUUGUCAUGCGGCCAUGUCGAUGGAGUGUCGAUGGAGGUUGCGUCAUAAGUGCCCAAGGUGUAGUUUCCCG
.......(((((((......(((((.(((((((.((((((((.(((((((.....)))))))..)))))))).))))))).)))))......))))))) (-30.98 = -31.73 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:39 2006