| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,089,071 – 12,089,165 |
| Length | 94 |
| Max. P | 0.774307 |
| Location | 12,089,071 – 12,089,165 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 89.28 |
| Mean single sequence MFE | -31.12 |
| Consensus MFE | -22.42 |
| Energy contribution | -22.54 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12089071 94 - 22224390 GGUUUUUGGCUUUGUAUGUAGU-----ACAUCCGCA-AUGGAAGUGAGGUU-UGGAGCUUCGCAUGGAUG-GAAACAUUUUGGG-GGAGCUCGAAAACCGA--AC (((((((((((((((((...))-----))).((.((-(.....(((((((.-....)))))))...((((-....))))))).)-))))).))))))))..--.. ( -33.20) >DroSec_CAF1 1906 96 - 1 GGUUUUUGGCUUUGUAUGUAGU-----ACAUCCGCAAAUGGAAGUGAGGUU-UGGAGCUUCGCCUGAAUGGGAAACAUUCUGGG-GAACCCCGAAAACCGA--AC (((((((((...(((((...))-----)))(((.((.......(((((((.-....)))))))..(((((.....))))))).)-))...)))))))))..--.. ( -31.00) >DroEre_CAF1 13257 101 - 1 GGGUUUUGGCUUUGUAUGUAGUACUAUACAUCCGCA-AUGGAAGUGAGGUU-UGCAGCUUCGUAUGGAUG-GAAACAUUCUGGG-GGAGCCCGAAAACCGAAAAC ((.((((((.......(((((.(((.(((.(((...-..))).))).))))-))))(((((.(..(((((-....)))))..).-))))))))))).))...... ( -32.20) >DroYak_CAF1 13555 96 - 1 GGUUUUUGGCUUUGUAUGUAGU-----ACAUCCGCA-AUGGAAGUGAGGUUUUGGAGCUUCGUAUGGAUG-GAAACUUUCUGGGGGGAGCCCGAAAACCGA--AC (((((((((((((.(....(((-----.(((((((.-......))((((((....))))))....)))))-...)))......).)))).)))))))))..--.. ( -28.10) >consensus GGUUUUUGGCUUUGUAUGUAGU_____ACAUCCGCA_AUGGAAGUGAGGUU_UGGAGCUUCGCAUGGAUG_GAAACAUUCUGGG_GGAGCCCGAAAACCGA__AC (((((((((((((...(.(((.......(((((.(....)...(((((((......)))))))..))))).........))).).))))).))))))))...... (-22.42 = -22.54 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:36 2006