Locus 462

Sequence ID X_DroMel_CAF1
Location 1,358,594 – 1,358,694
Length 100
Max. P 0.565690
window707

overview

Window 7

Location 1,358,594 – 1,358,694
Length 100
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.92
Mean single sequence MFE -32.03
Consensus MFE -23.64
Energy contribution -23.70
Covariance contribution 0.06
Combinations/Pair 1.13
Mean z-score -1.02
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.565690
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1358594 100 + 22224390
GGUGCU----UUG----UGUAGGAAACUCACCCGUCGGGCUGGGCGUCAGCGACAUCAUGUCGAAGUGGAUGUUCUUCUGCUCGAAGGAGUAGUCCUUGAGGAAGGUC
...(((----((.----(..((((.((((.....((((((.(((((((..((((.....)))).....)))))))....))))))..))))..))))...).))))). ( -34.90)
>DroPse_CAF1 28899 102 + 1
GGAUCC----CCAUGGAUCAUGG--ACUCACCUGUCGGACUGGGCGUCAGGGACAUCAUGUCGAAGUGGAUGUUCUUCUGCUCGAAGGAGUAGUCUUUGAGGAAGGUU
.(((((----....)))))...(--((......))).((((...(.((((((((.((...((((.(..((......))..)))))..))...)))))))).)..)))) ( -34.30)
>DroGri_CAF1 29244 104 + 1
GAAUG-UAAUAAUUGGGAU-UU--CACUUACCGGUCGGACUCGGCGUCAGGGACAUCAUAUCGAAGUGAAUGUUCUUCUGCUCGAAUGAGUAGUCCUUGAGGAAGGUG
.....-.............-..--(((((.((.((((....)))).((((((((.((((.((((.(((((.....))).))))))))))...)))))))))).))))) ( -29.90)
>DroMoj_CAF1 34147 96 + 1
----------ACUUGGGCUAUU--CACUUACCAGUUGGACUUGGCGUCAAGGACAUCAUGUCGAAAUGUAUGUUCUUCUGCUCGAAGGAGUAGUCCUUGAGGAAGGUG
----------.(..((((((((--(.(((.((....))....((((..(((((((((((......))).)))))))).))))..))))))))))))..)......... ( -29.00)
>DroAna_CAF1 19285 98 + 1
UAUACU----AUA----GCAAGG--ACUCACCUGUUGGACUCGGCGUCAGGGACAUCAUGUCAAAGUGUAUGUUCUUCUGCUCGAAGGAGUAGUCCUUGAGGAAGGUG
..((((----.(.----.(((((--((((.(((.......((((((..(((((((((((......))).)))))))).))).)))))).).))))))))...).)))) ( -29.81)
>DroPer_CAF1 29727 102 + 1
GGAUCC----CCAUGGAUCAUGG--ACUCACCUGUCGGACUGGGCGUCAGGGACAUCAUGUCGAAGUGGAUGUUCUUCUGCUCGAAGGAGUAGUCUUUGAGGAAGGUU
.(((((----....)))))...(--((......))).((((...(.((((((((.((...((((.(..((......))..)))))..))...)))))))).)..)))) ( -34.30)
>consensus
GGAUC_____ACAUGG_UCAUGG__ACUCACCUGUCGGACUGGGCGUCAGGGACAUCAUGUCGAAGUGGAUGUUCUUCUGCUCGAAGGAGUAGUCCUUGAGGAAGGUG
..............................((....))(((...(.((((((((........((((........))))(((((....))))))))))))).)..))). (-23.64 = -23.70 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:06 2006