Locus 4619

Sequence ID X_DroMel_CAF1
Location 12,087,091 – 12,087,189
Length 98
Max. P 0.795286
window7593

overview

Window 3

Location 12,087,091 – 12,087,189
Length 98
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 83.82
Mean single sequence MFE -23.62
Consensus MFE -17.56
Energy contribution -18.36
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.74
SVM decision value 0.60
SVM RNA-class probability 0.795286
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12087091 98 - 22224390
CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCAUGUCCAUG-----------
......................................((((.(((.....(......)((((((((((....)))))))))).....)))))))...----------- ( -21.90)
>DroSec_CAF1 2 90 - 1
CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCA-------------------
......................................(((((((........)))...((((((((((....))))))))))..)))).------------------- ( -21.80)
>DroSim_CAF1 2 92 - 1
CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCA------UG-----------
......................................(((((((........)))...((((((((((....))))))))))..)))).------..----------- ( -21.80)
>DroEre_CAF1 11343 103 - 1
CACCCAUUUCCAUGCCCCAACCCAUUUACCGUCUCCUAGGACCGUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCAUG------UCCGUGUCCGUGUCCAUGUCCAU
..........((((..((....................(((((..........).))))(((((((((..(((....)))------)))))))))).)..))))..... ( -24.00)
>DroYak_CAF1 11629 109 - 1
CCCCCAUUUCCAUUCUCCAACACAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCUAUGUCCGUGUCCGUGUCCGU
..........(((((......((((...((........))...))))....)))))..((((((((((..((((..((((........))))..)))))))))))))). ( -28.60)
>consensus
CACCCAUUUCCAUUCCCCAACCCAUUUACCGUCUCCUAGGACCAUGUAACCGAGUGUCCGGAUACGGAUCCAUGUCCGUGUCCAUGUCCAUGUCC_UG___________
......................................(((((.((....)).).))))((((((((((....)))))))))).......................... (-17.56 = -18.36 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:33 2006