Locus 4610

Sequence ID X_DroMel_CAF1
Location 12,069,969 – 12,070,080
Length 111
Max. P 0.999880
window7579

overview

Window 9

Location 12,069,969 – 12,070,080
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 92.34
Mean single sequence MFE -35.83
Consensus MFE -31.18
Energy contribution -31.82
Covariance contribution 0.64
Combinations/Pair 1.09
Mean z-score -3.42
Structure conservation index 0.87
SVM decision value 4.36
SVM RNA-class probability 0.999880
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12069969 111 - 22224390
AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUUGAUCAAUUUGAAACUUGGCCAUU
...(((((((....((((...((((((((((((((((((.(((.....)))))))))))))))))))))...)).)).((((...............)))))))))))... ( -37.86)
>DroSec_CAF1 5830 111 - 1
AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAGUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUGGAUCAAUUUGAAACUUGGCCAUU
...(((((((....((((...((((((((((((((((((.(((.....)))))))))))))))))))))...)).))...(((....)))...........)))))))... ( -38.20)
>DroSim_CAF1 5842 111 - 1
AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUGGAUCAAUUUGAAACUUGGCCAUU
...(((((((....((((...((((((((((((((((((.(((.....)))))))))))))))))))))...)).))...(((....)))...........)))))))... ( -38.20)
>DroEre_CAF1 5445 111 - 1
AAAGGCCGGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGCACUCCGAUUUAUUUGUACUUUUUGUGAGGCGCAAUUUCUGACUUGAUCAACUUAAAACUUUACAGCU
.(((..(((((...((((..(((((((((((((((((((.(((.....))))))))))))))))))))))..)).))..))))).)))....................... ( -34.30)
>DroYak_CAF1 5442 111 - 1
AAAGGCCGGGAUAAUGGCGGCACAGGGAGUGCAAAUAAAAUCGUACUCCAAUUUAUUUGUACUUCUUGUAAGGCGCAAUUUCUGACUCGAUCAAUUUAAAACUUUGCAGCU
...(..((((..(((.(((.(((((((((((((((((((............))))))))))))))))))..).))).))).....))))..)................... ( -30.60)
>consensus
AAAGGCCAGGAUAAUGGCAGCACAGGGAGUGCAAAUAAAAUCGUACUCCGAUUUAUUUGUACUUUUUGUUGGGCGCAAUUUCUGACUGGAUCAAUUUGAAACUUGGCCAUU
...(((((((....((((...(((((((((((((((((.((((.....)))))))))))))))))))))...)).)).....(((.....)))........)))))))... (-31.18 = -31.82 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:21 2006