Locus 461

Sequence ID X_DroMel_CAF1
Location 1,357,942 – 1,358,038
Length 96
Max. P 0.639647
window706

overview

Window 6

Location 1,357,942 – 1,358,038
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 80.88
Mean single sequence MFE -28.90
Consensus MFE -18.85
Energy contribution -20.60
Covariance contribution 1.75
Combinations/Pair 1.14
Mean z-score -1.75
Structure conservation index 0.65
SVM decision value 0.22
SVM RNA-class probability 0.639647
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1357942 96 - 22224390
AGGACAGCCAGAAGCAUAUUCGCGGUGAGUUACGUUUUUCUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUGUGCAUGUGGCACAUUU
((((((((((((.(((.....(((........))).....))))))))))((((....)))))))))....(((((((.......))))))).... ( -32.00)
>DroSec_CAF1 18225 95 - 1
AGGACAGCCAGAAGCAUAUUCGCGGUGAGUUACGUUUUUCUGCUCUGGUUGAAUGACAACUCGUUUUUCAGGUGCGAUUGUGCUAGUGGCACAUU-
......((((..((((((.(((((.((((((..(((.(((.((....)).))).))))))))(.....).).))))).))))))..)))).....- ( -29.90)
>DroEre_CAF1 18553 86 - 1
AGGACACCCAAGGGCAU------GGUGAGUUUCGUUUCUCUGCUGUGGUUGAGUGACAAUUCG----UCAGGUGCCACUGUGCAAGUGGUACAUUU
..(((.((....))(((------((((((........))).))))))...((((....)))))----))..((((((((.....)))))))).... ( -26.90)
>DroYak_CAF1 19810 83 - 1
AGGACAGGCAAGAGCAU------GGUGAGUUA-------CUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUCUGCAAGUGGCACAUUU
(((((.(((.((((((.------(........-------))))))).)))((((....)))))))))....((((((((.....)))))))).... ( -26.80)
>consensus
AGGACAGCCAAAAGCAU______GGUGAGUUACGUUUUUCUGCUCUGGUUGAGUGACAACUCGUUUUUCAGGUGCCAUUGUGCAAGUGGCACAUUU
....((((((((.(((.....(((........))).....)))))))))))....................((((((((.....)))))))).... (-18.85 = -20.60 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:05 2006