Locus 4608

Sequence ID X_DroMel_CAF1
Location 12,065,569 – 12,065,666
Length 97
Max. P 0.658535
window7576

overview

Window 6

Location 12,065,569 – 12,065,666
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 88.58
Mean single sequence MFE -20.03
Consensus MFE -14.79
Energy contribution -17.73
Covariance contribution 2.95
Combinations/Pair 1.05
Mean z-score -2.38
Structure conservation index 0.74
SVM decision value 0.26
SVM RNA-class probability 0.658535
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12065569 97 + 22224390
UGAAAAAAGGAUAAAAUAUAUCUGUGUGUGUAUGCAGAUGGAGGCGAAGAGCGAAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU
........(((((.....(((((((((....)))))))))...((.....))..............))))).........((((....))))..... ( -21.60)
>DroEre_CAF1 1336 84 + 1
UGAAAAAAGGAUAAAAU--AUCUGUGUGUAUAUGCAGAUGGA-----------GAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU
........((......(--((((((((....)))))))))..-----------...((((......))))))........((((....))))..... ( -17.30)
>DroYak_CAF1 1188 95 + 1
UGAAAAAAGGAUAAAAU--AUCUAUGUGUAUAUGCAGAUGGAGGCGAAGAGCAGAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU
........(((((....--.(((((.(((....))).))))).((.....))..............))))).........((((....))))..... ( -21.20)
>consensus
UGAAAAAAGGAUAAAAU__AUCUGUGUGUAUAUGCAGAUGGAGGCGAAGAGC_GAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU
........(((((.......(((((.(((....))).))))).((.....))..............))))).........((((....))))..... (-14.79 = -17.73 +   2.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:18 2006