Locus 4605

Sequence ID X_DroMel_CAF1
Location 12,063,481 – 12,063,580
Length 99
Max. P 0.554037
window7569

overview

Window 9

Location 12,063,481 – 12,063,580
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.84
Mean single sequence MFE -22.07
Consensus MFE -9.88
Energy contribution -10.38
Covariance contribution 0.50
Combinations/Pair 1.24
Mean z-score -1.69
Structure conservation index 0.45
SVM decision value 0.04
SVM RNA-class probability 0.554037
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12063481 99 - 22224390
UUGGUAAG-----------UAAUUUGAGUGCUGUUGUC-UAGAAGACAACAACCUUGUGACCUUUCGUUACGCUUUACUAAAUCCUUUUCGUGCUUCUCUUUUAUCAAGUC---------
((((((((-----------......(((..((((((((-.....))))))).....(((((.....)))))...................)..)))....))))))))...--------- ( -22.10)
>DroSec_CAF1 94940 98 - 1
UGGGUGAG-----------UAAU-UGAGUAGGGUUGUC-UUAAAGACAACAACCUUGUGACCUUUCGUUACGCUUUACUAAAUCCAUUUUGUGUUUCUCUUUUAUCAAGUU---------
(((((.((-----------((..-.(((((((((((((-.....))))))..))).(((((.....)))))))))))))..))))).........................--------- ( -20.40)
>DroSim_CAF1 71995 98 - 1
UGGGUGAG-----------UAAU-UGAGUGGGGUUGUC-UUAAAGACAACAACCUUGUGACCUUUCGUUACGCUUUACUAAAUCCAUUUUGUAUUUCUCUUUUAUCAAGUU---------
.(((.(((-----------((..-.(((((((((((((-.....))))))......(((((.....)))))...........)))))))..))))))))............--------- ( -22.70)
>DroEre_CAF1 92631 106 - 1
UAUGUGAG-----------UAAU-UAAGUGGGGUUGUC-UUAAAGACAACAACCUUGUGACCU-UCGUUACGCUUUACUAUGUCCUUUUCCUGUUUCUCUUUGAUCAGUUAAUUUCUCUU
.....(((-----------.(((-(((.(((.((((((-.....))))))......(((((..-..))))).................................))).)))))).))).. ( -21.00)
>DroYak_CAF1 94885 107 - 1
UAUGUGAG-----------UAAU-UUAGUGGGGUUGUC-UUGAAGACAACAACCUUGUGACCUUUUGUUACGCUUUACUAAGUCCUUUUUCUGUUUCACUUCCAUCAAUUAUAUACACUU
..((((.(-----------((((-(..(((((((((((-.....))))))......(((((.....)))))((((....)))).................))))).)))))).))))... ( -21.10)
>DroAna_CAF1 35209 98 - 1
UGGGGGAAAGAGGUUUAAAAAGU-UAAUGGAAGUUGCGUUUUGAGACAACAACCUUGUGACUUUUCGUUAUGCUUUACUUUCUUUACUU-----------UUUAUCC-UUU---------
........(((((..((((((((-....((((((.((((..(((((..(((....)))....)))))..))))...))))))...))))-----------)))).))-)))--------- ( -25.10)
>consensus
UGGGUGAG___________UAAU_UGAGUGGGGUUGUC_UUAAAGACAACAACCUUGUGACCUUUCGUUACGCUUUACUAAAUCCAUUUUGUGUUUCUCUUUUAUCAAGUU_________
..........................((((((((((((......))))))......(((((.....)))))..))))))......................................... ( -9.88 = -10.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:12 2006