Locus 4602

Sequence ID X_DroMel_CAF1
Location 12,059,652 – 12,059,744
Length 92
Max. P 0.732141
window7565

overview

Window 5

Location 12,059,652 – 12,059,744
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.82
Mean single sequence MFE -19.86
Consensus MFE -15.48
Energy contribution -15.80
Covariance contribution 0.32
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.78
SVM decision value 0.43
SVM RNA-class probability 0.732141
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12059652 92 + 22224390
UUUUCUCGGGACUCUCGCCCGCGUUUCCCCGCCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU
......((((.......)))).((((((..((((((.((............)).))))))..(.......).............)))))).. ( -20.40)
>DroSec_CAF1 91153 91 + 1
UUUUCUCGGGACUCCCGCCCGCGUUUCCCCGCCACAAGAUCC-CCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU
......((((.......)))).((((((..((((((.((...-........)).))))))..(.......).............)))))).. ( -20.50)
>DroSim_CAF1 68499 92 + 1
UUUUCUCGGGACUCCCGCCCGCGUUUCCCCGCCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU
......((((.......)))).((((((..((((((.((............)).))))))..(.......).............)))))).. ( -20.40)
>DroEre_CAF1 88828 91 + 1
UUUUCCCUGCACUUUUGCCCGCGUUUUCCC-CCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUACCCACUCAUAAAAACUGGGAACAU
..(((((.(((....)))..((((......-(((((.((............)).))))).))))....................)))))... ( -17.60)
>DroYak_CAF1 91079 90 + 1
UUUUUUCGGGACUUUUGCCCGCGUUUUCC--CCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACGGGAAACAU
.......(((.(....))))((((.....--(((((.((............)).))))).))))..(((((............))))).... ( -20.40)
>consensus
UUUUCUCGGGACUCUCGCCCGCGUUUCCCCGCCACAAGAUCCCCCCGUUGUUCAUGUGGCACGCACUUCCCACUCAUAAAAACUGGAAACAU
.(((((.(((.......)))((((......((((((.((............)).))))))))))....................)))))... (-15.48 = -15.80 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:09 2006