Locus 4600

Sequence ID X_DroMel_CAF1
Location 12,056,327 – 12,056,437
Length 110
Max. P 0.872852
window7562

overview

Window 2

Location 12,056,327 – 12,056,437
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.25
Mean single sequence MFE -24.92
Consensus MFE -13.94
Energy contribution -17.18
Covariance contribution 3.25
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.56
SVM decision value 0.88
SVM RNA-class probability 0.872852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12056327 110 + 22224390
UUGUUAAACGCAUGCAUACAUAAAAUGUAUAUUUGUGCACUUUGUAAACAAAAAUCAAAUAGGCAUAUUAUCUAAUA----------UUGCCAUAAAUGCGUAUUAGCGUGCGAUUAAUA
.((((((.((((((((((((((((.(((((....))))).)))))................((((((((....))))----------.))))........))))..))))))).)))))) ( -28.00)
>DroSec_CAF1 87958 119 + 1
UUGUUAAACGCAUGCAUACAUAAAAUGUAUAUUUGUGCACAUUGUAAACAA-AAUCAAAUAGCCAUAUUAUCUAAUAUGAUUUUGCGUUGCCAUAAAUGCAUAUUAGCGUGCGAUUAAUA
.((((((.(((((((((((((...))))))...((((((.((.((((.(((-(((((..(((.........)))...))))))))..)))).))...))))))...))))))).)))))) ( -30.00)
>DroEre_CAF1 85625 115 + 1
UUGUUAAACGCACGCAUUCAUAAA----AUGUAUGAGCACUUUGUAAACAA-AAUCAAAUAGGCAUAUUAUCUGAUUUGAUUUUAGGUUGCCAUAAAUGCUUAUUUGCAUGGGAUUAAUA
.((((((.(.((.(((........----....(((((((.(((((.(((.(-(((((((((((.......))).)))))))))...)))...)))))))))))).))).)).).)))))) ( -22.42)
>DroYak_CAF1 87832 108 + 1
UUGUUAAACGCACGCAGUCAUAAA-UGUAUAUUUGUGCAGUUUGUAAACAA-AAUCAAAUAGGCAUAAC----------AUUUUCCGUUUCCCUAAAUGCUUAAUAGCAUGGGAUUAAUA
.((((((....(((.........(-(((.((((((.....((((....)))-)..)))))).))))...----------......))).((((...(((((....))))))))))))))) ( -19.27)
>consensus
UUGUUAAACGCACGCAUACAUAAA_UGUAUAUUUGUGCACUUUGUAAACAA_AAUCAAAUAGGCAUAUUAUCUAAUA__AUUUU_CGUUGCCAUAAAUGCUUAUUAGCAUGCGAUUAAUA
.((((((.(((((((....(((((.(((((....))))).)))))............(((((((((..............................))))))))).))))))).)))))) (-13.94 = -17.18 +   3.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:06 2006