Locus 46

Sequence ID X_DroMel_CAF1
Location 207,207 – 207,311
Length 104
Max. P 0.798558
window57

overview

Window 7

Location 207,207 – 207,311
Length 104
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -22.70
Consensus MFE -19.60
Energy contribution -19.47
Covariance contribution -0.13
Combinations/Pair 1.10
Mean z-score -1.70
Structure conservation index 0.86
SVM decision value 0.61
SVM RNA-class probability 0.798558
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 207207 104 + 22224390
UUUUGUAUAUGGUAGCCAAAUAUUUAUCUG-GCAUUACGUUAUUUGUUGAGGCCAUUUAAACAAAAUGAUGUCAAGAGUAAUGAAUGCAGUCAAUAAAUAUGUAC
....((((.(((...))).((((((((...-(((((.((((((((.((((.(.(((((.....))))).).))))))))))))))))).....)))))))))))) ( -22.10)
>DroSec_CAF1 2300 104 + 1
U-UUGUAUAUGCUAGCCAAAUAUUUAUCUGGGCAUUACGUUAUUUGUUGAGGCCAUUUUCACAAAAUGAUGUCAAGAGUAAUGAAUGCAGUAAAUAAAUAUGUAC
.-..(((((((....(((.((....)).)))(((((.((((((((.((((.(.(((((.....))))).).)))))))))))))))))..........))))))) ( -22.20)
>DroEre_CAF1 3055 104 + 1
UUUUGUAUAUGCAAGCCAAAUAUUUACCUG-GCAUUAUAUUAUUUGUUGAGGCCAUUUGAACAAAAUGAUGUCAAGAGUAAUGGAUGCAGUAUAUAAAUAUGUAC
.((((((((((((.((((..........))-))....((((((((.((((.(.(((((.....))))).).))))))))))))..)))).))))))))....... ( -24.30)
>DroYak_CAF1 2270 104 + 1
UUUUGUUCAUGCAAGCCAAAUAUUUAUCCG-GCAAUACGUUAUUUGUUGAGGCCAUUUGAACAAAAUGAUGUCAAGAGUAAUGGAUGCAGUAAAUAAAUAUGUAC
.((((((..((((.(((............)-))....((((((((.((((.(.(((((.....))))).).))))))))))))..))))...))))))....... ( -22.20)
>consensus
UUUUGUAUAUGCAAGCCAAAUAUUUAUCUG_GCAUUACGUUAUUUGUUGAGGCCAUUUGAACAAAAUGAUGUCAAGAGUAAUGAAUGCAGUAAAUAAAUAUGUAC
...................((((((((....(((((.((((((((.((((.(.(((((.....))))).).))))))))))))))))).....)))))))).... (-19.60 = -19.47 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:15 2006