Locus 4599

Sequence ID X_DroMel_CAF1
Location 12,055,224 – 12,055,317
Length 93
Max. P 0.616474
window7561

overview

Window 1

Location 12,055,224 – 12,055,317
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 91.40
Mean single sequence MFE -24.60
Consensus MFE -20.23
Energy contribution -20.48
Covariance contribution 0.25
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.82
SVM decision value 0.17
SVM RNA-class probability 0.616474
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12055224 93 - 22224390
GACGAUUCCCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCGCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC
(((((((..((.(((..(((((........))))).))).))..))))(((.....)))))).......(((((((........))))))).. ( -27.80)
>DroSec_CAF1 86891 93 - 1
GGCGAUUCCCAACUUGAAAACCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCGCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC
(((((((..((.(((.....((........))....))).))..))))(((.....)))))).......(((((((........))))))).. ( -20.80)
>DroEre_CAF1 84549 83 - 1
GGCGAUCCCCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAU----------CGUUUUGCAUUCGAAAUGAGAUGCAAUC
..(((((..((.(((..(((((........))))).))).))..)))))((...(----------(((((((....))))))))...)).... ( -24.50)
>DroYak_CAF1 86700 93 - 1
GGCCAUCCUCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCCCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC
.((.(((.(((..(((((((((........)))))....((((((((((((........))))))))....))))))))..)))))))).... ( -25.30)
>consensus
GGCGAUCCCCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCGCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC
(.(((((..((.(((..(((((........))))).))).))..))))).)..................(((((((........))))))).. (-20.23 = -20.48 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:05 2006