Locus 4597

Sequence ID X_DroMel_CAF1
Location 12,044,682 – 12,044,791
Length 109
Max. P 0.963874
window7559

overview

Window 9

Location 12,044,682 – 12,044,791
Length 109
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 71.76
Mean single sequence MFE -22.10
Consensus MFE -13.40
Energy contribution -12.20
Covariance contribution -1.20
Combinations/Pair 1.42
Mean z-score -1.81
Structure conservation index 0.61
SVM decision value 1.56
SVM RNA-class probability 0.963874
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12044682 109 + 22224390
UUUGGAAACGAAUGCUGAAGUUUUAGUAUUUAAAGAGAUAUUUCUUCAAAGAUUUCAGCUUU-------UUUUUUUAAAUAUAUAGGUUUUUGUUAGGUUUCGGAAAUGUGAAACU
((((((((.(((.((((((((((((((((((....)))))))......))))))))))).))-------).)))))))).................(((((((......))))))) ( -22.10)
>DroSec_CAF1 76643 104 + 1
U-CAGAAACGAAUGCUGAAGUUUUAUUGCAUUAAGAUAUAUUCCUUCAGGAAUUUCAGU----------UUGUUUUAAAUAUAAA-GUUUUUGUUAGGUUUCGAAAACAUAAAACU
.-..(((((((..((((((((((((......))))))..(((((....)))))))))))----------))))))).........-(((((((........)))))))........ ( -21.30)
>DroEre_CAF1 74097 115 + 1
U-UAGAAACGAAUGUUGGAAUUUAAGUAUUUUUAUGGAUAUCCCGUCAAAGAUUUCAGCUUGUUCUAAUAUUUCAAAAAUACAUACGUUUUUGUUAGGUUUCCUAAAAAUAAAACU
.-..(((((((((((((((((..((((((((((((((.....)))).))))))....))))))))))))))))(((((((......)))))))....))))).............. ( -22.90)
>consensus
U_UAGAAACGAAUGCUGAAGUUUUAGUAUUUUAAGAGAUAUUCCUUCAAAGAUUUCAGCUU________UUUUUUUAAAUAUAUA_GUUUUUGUUAGGUUUCGAAAAAAUAAAACU
....(((((....((((((((((((((((((....)))))))......))))))))))).....................(((........)))...))))).............. (-13.40 = -12.20 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:03 2006