| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,034,904 – 12,035,023 |
| Length | 119 |
| Max. P | 0.704258 |
| Location | 12,034,904 – 12,035,023 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.55 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -21.16 |
| Energy contribution | -21.35 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12034904 119 - 22224390 GUUCUUU-GCCGCGUCUUUUGUGGCAUGCCACAAUGUUCAUAUUGUUGGAUUUAUUCACAGUUGAGGAGAUCACAUUACCUCAAGAUUGAGUGGCUGAAACUCGUUUUUUUUUGUUUUUA .(((..(-((((((.....))))))).(((((...(((((......)))))....(((...((((((.(((...))).))))))...)))))))).)))..................... ( -29.10) >DroSec_CAF1 66886 111 - 1 GUUCUUU-GCCGUGUCUUUUGUGGUAUACCACAAUGUUCAUAUUGUUGGAUUUCUUCACGGUUUAGGAGAUCACAUUACCUAAAGAUUGAGUGGCUGAAUCUCGUUUC--------UUCA ...((..-((((((....((((((....)))))).(((((......))))).....))))))..))(((((((..(((((........).)))).)).))))).....--------.... ( -26.30) >DroEre_CAF1 64526 111 - 1 GUUCUUU-GCCGCGUCUUCUGAGGUAUACCAAAAUAUCCAUAUUGUUUGGUUUCUUCACUGUUGAGGAGAUCGUAUUACCUCAGGAUUGAGUGGCGGAAUCUCGCCUU--------UUCA ....(((-(((((...(((((((((((((..(((((.......)))))((((((((((....))))))))))))).))))))))))....))))))))..........--------.... ( -38.10) >DroYak_CAF1 66859 112 - 1 GUUCUUUGGCCGUGUCUUUUGAGGUAUACCAAAAUAUCCAUAUUGUUGGAUUUCUUCACCGUUGAGCAGAUCAUAUUACCCCAAGAUUGAGUGGCUGAAUCUUGUUUU--------UUCA ((((..(((.............((....)).....(((((......))))).......)))..))))..............(((((((.((...)).)))))))....--------.... ( -21.20) >consensus GUUCUUU_GCCGCGUCUUUUGAGGUAUACCAAAAUAUCCAUAUUGUUGGAUUUCUUCACAGUUGAGGAGAUCACAUUACCUCAAGAUUGAGUGGCUGAAUCUCGUUUU________UUCA ....(((.(((((...(((((.((((.....(((((.......)))))((((((((((....))))))))))....)))).)))))....))))).)))..................... (-21.16 = -21.35 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006