Locus 4594

Sequence ID X_DroMel_CAF1
Location 12,032,128 – 12,032,223
Length 95
Max. P 0.956809
window7556

overview

Window 6

Location 12,032,128 – 12,032,223
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 88.53
Mean single sequence MFE -22.11
Consensus MFE -18.37
Energy contribution -18.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.83
SVM decision value 1.47
SVM RNA-class probability 0.956809
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12032128 95 + 22224390
ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCCUUUUUUUUUUUUGGUUUUGUUGU-CCCCAGUUUUG
....((((((.(((((((((((......((((((..((...))..))))))((......)).........))))))...)))))-.....)))))) ( -25.80)
>DroSec_CAF1 64208 80 + 1
ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU----------------GUCCCUCAGUUUUC
.((((((((..(((((................)))))))))))))......((((...........----------------)))).......... ( -20.29)
>DroSim_CAF1 62904 80 + 1
ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU----------------GUCCCUCAGUUUUC
.((((((((..(((((................)))))))))))))......((((...........----------------)))).......... ( -20.29)
>DroEre_CAF1 61940 79 + 1
ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUCGGAUUCGCCUUUUUU----------------GUCC-CCAGUUUUC
.((((((((..(((((................)))))))))))))......((((...........----------------))))-......... ( -20.59)
>DroYak_CAF1 64078 79 + 1
ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU----------------GUUU-CCAGUUUUC
.((((((((..(((((................)))))))))))))...((((((..((.......)----------------)..)-))))).... ( -23.59)
>consensus
ACACCAAAGCCGCAGCGCCAAACUUCAAAAUGGCUGCCUUUGGUGGCCAUUGGAUUCGCCUUUUUU________________GUCCCCCAGUUUUC
.((((((((..(((((................)))))))))))))......((.....)).................................... (-18.37 = -18.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:01 2006