Locus 4592

Sequence ID X_DroMel_CAF1
Location 12,026,006 – 12,026,115
Length 109
Max. P 0.660981
window7553

overview

Window 3

Location 12,026,006 – 12,026,115
Length 109
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 87.05
Mean single sequence MFE -25.04
Consensus MFE -18.26
Energy contribution -19.86
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.73
SVM decision value 0.27
SVM RNA-class probability 0.660981
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12026006 109 + 22224390
AAAAAUUCCAUGAUUCCAUGAGU-CACAUAUUGUGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC
..........((((((...))))-))....(((.((.....(((((...(((((..(((((((....)))))))..)))))...)))))((......))....))))).. ( -22.90)
>DroSec_CAF1 58330 109 + 1
AAAAAUGCAAUGAUUCCAUGAGU-CACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC
......((..((((((...))))-))....(((((..(...(((((...(((((..(((((((....)))))))..)))))...)))))...)..)))))...))..... ( -30.10)
>DroSim_CAF1 56934 109 + 1
AAAAAUGCAAUGAUUCCAUGAGU-CACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC
......((..((((((...))))-))....(((((..(...(((((...(((((..(((((((....)))))))..)))))...)))))...)..)))))...))..... ( -30.10)
>DroEre_CAF1 54598 91 + 1
AAA-----AAUAGUUCCA--------AAUA------GUUCCGAAUUGUCUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC
...-----..........--------....------.....(((((...(((((..(((((((....)))))))..)))))...)))))..................... ( -17.50)
>DroYak_CAF1 57969 105 + 1
AGA-----AAUAGUUCCAUGAGUCCACAUAUUGGGCGAUACGAAUUGACUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUUAGUCCUGUUUACCCAAGAAGCCAAAC
..(-----(((((........(((((.....))))).......(((((.(((((..(((((((....)))))))..))))).))))).))))))................ ( -24.60)
>consensus
AAAAAU_CAAUGAUUCCAUGAGU_CACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC
..............................(((((..(...(((((...(((((..(((((((....)))))))..)))))...)))))...)..))))).......... (-18.26 = -19.86 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:58 2006