Locus 4591

Sequence ID X_DroMel_CAF1
Location 12,025,862 – 12,025,966
Length 104
Max. P 0.582677
window7552

overview

Window 2

Location 12,025,862 – 12,025,966
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.96
Mean single sequence MFE -28.15
Consensus MFE -16.75
Energy contribution -17.00
Covariance contribution 0.25
Combinations/Pair 1.25
Mean z-score -1.57
Structure conservation index 0.60
SVM decision value 0.10
SVM RNA-class probability 0.582677
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12025862 104 - 22224390
UAACCCGCACA---------CGCCGGUCA-ACUUUUCUCCAUCGGCAAAUGCACAAUUUGGCCAGCAAAAUGCAUAUUUUUGGCAUCCAUUUGUAUGGCUUUGUUGGUUCGU------AG
......(((..---------.((((((..-..........))))))...))).((((..((((((((((((((.........))))...))))).)))))..))))......------.. ( -26.80)
>DroPse_CAF1 157699 111 - 1
UGGACACCACA---------UUUCUCUCUGGUUUUGCUCCCAUGGAAAAUGAACAUUUUGGUCUACAAAAUGCAUAUUUGUGGCAUCCAUUUGUAUGGCUUUGUUGGCCCAAAGCCAAAG
((((..((((.---------....(((.(((........))).)))(((((..(((((((.....)))))))..)))))))))..))))......((((((((......))))))))... ( -33.30)
>DroSim_CAF1 56779 104 - 1
UAACCCGCACA---------CGCCGGUCA-ACUUUUCUCCAUCGGCAAAUGCACAAUUUGGCCUGCAAAAUGCAUAUUUGUGGCAUCCAUUUGUAUGGCUUUGUUGGUCCGU------AG
......(((..---------.((((((..-..........))))))...))).((((..((((((((((((((.........))))...)))))).))))..))))......------.. ( -27.20)
>DroEre_CAF1 54441 113 - 1
UACCCCGCACGCCCCGCACAACCCGGUCA-ACUUUUCUCCAUCGGCAAAUGCACAAUUUGGCCUGCAAAAUGCAUAUUUGUGGCAUCCAUUUGUAUGGCUUUGUUGGUCCGU------AG
........(((..(((((....(((((..-..........)))))....)))..(((..((((((((((((((.........))))...)))))).))))..)))))..)))------.. ( -25.60)
>DroYak_CAF1 57802 103 - 1
UACCCUGCCC----------AACCGGUCA-ACUUUUCUCCAUCGGCAAAUGCACAAUUUGGCCUGCAAAAUGCAUAUUUGUGGCAUCCAUUUGUAUGGCUUUGUUGGUCCGU------AC
..........----------...(((.(.-..............((....)).((((..((((((((((((((.........))))...)))))).))))..))))).))).------.. ( -22.70)
>DroPer_CAF1 162827 111 - 1
UGGACACCACA---------UUUCUCUCUGGUUUUGCUCCCAUGGAAAAUGAACAUUUUGGUCUACAAAAUGCAUAUUUGUGGCAUCCAUUUGUAUGGCUUUGUUGGCCCAAAGCCAAAG
((((..((((.---------....(((.(((........))).)))(((((..(((((((.....)))))))..)))))))))..))))......((((((((......))))))))... ( -33.30)
>consensus
UAACCCGCACA_________AGCCGGUCA_ACUUUUCUCCAUCGGCAAAUGCACAAUUUGGCCUGCAAAAUGCAUAUUUGUGGCAUCCAUUUGUAUGGCUUUGUUGGUCCGU______AG
.....................((((((.............)))))).............((((.(((((...(((((..((((...))))..)))))..))))).))))........... (-16.75 = -17.00 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:57 2006