Locus 4588

Sequence ID X_DroMel_CAF1
Location 12,023,968 – 12,024,072
Length 104
Max. P 0.966486
window7549

overview

Window 9

Location 12,023,968 – 12,024,072
Length 104
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -19.62
Consensus MFE -19.28
Energy contribution -19.08
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.98
SVM decision value 1.60
SVM RNA-class probability 0.966486
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12023968 104 - 22224390
AUUUACCAUUUUCCUACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAACAGCGUUACAGCUCCAA-AUUU
........................(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))....-.... ( -20.60)
>DroSec_CAF1 56306 103 - 1
AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA-AUUU
..............-.........(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))....-.... ( -20.60)
>DroSim_CAF1 54909 103 - 1
AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA-AUUU
..............-.........(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))....-.... ( -20.60)
>DroEre_CAF1 52647 104 - 1
AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUCCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAACAGCGUUACAGCUCCAAAAUUU
..............-.........(((...((..((.(.....).)).))............((((((((((((....))))))))))))...)))......... ( -16.80)
>DroYak_CAF1 54159 103 - 1
AUUUACCAUUUUCC-ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGUGCCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA-AUUU
..............-.........(((...((((((.(((...)))..))).))).......((((((((((((....))))))))))))...)))....-.... ( -19.50)
>consensus
AUUUACCAUUUUCC_ACUUCCUCCAGCAUCGCAAGCACUUCCUGAGCCGCUGCGUCAUCAUCAGCGUUGUUUUAUAGAUAAAGCAGCGUUACAGCUCCAA_AUUU
........................(((..((((.((.(((...)))..))))))........((((((((((((....))))))))))))...)))......... (-19.28 = -19.08 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:54 2006