Locus 4585

Sequence ID X_DroMel_CAF1
Location 12,020,463 – 12,020,562
Length 99
Max. P 0.873010
window7543

overview

Window 3

Location 12,020,463 – 12,020,562
Length 99
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 96.01
Mean single sequence MFE -35.73
Consensus MFE -32.13
Energy contribution -32.80
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.90
SVM decision value 0.88
SVM RNA-class probability 0.873010
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12020463 99 - 22224390
--AAUUUGAACUAUGCCAUGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGAGCAUGUGGGUGGUGGCAUGUUGA
--......(((..((((((.(((((((((.(((((...)))))(((((((((.((.....))))))))))).....))))))))).))))))....))).. ( -36.30)
>DroEre_CAF1 50917 99 - 1
--AAUUUGCACAAUGCCAGGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGAGCAUGUGGGUGGUGGCAUGUUGA
--(((.(((.....((((..(((((((((.(((((...)))))(((((((((.((.....))))))))))).....)))))))))..)))).))).))).. ( -34.00)
>DroYak_CAF1 52097 101 - 1
UGAAUUUGAACUAUGCCAGGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGACCAUGUGGGUGGUGGCAUGUUGA
....(((((.....((((((((((((((..(((((...)))))...)))))))))))..)))....))))).((((.(((((....))))).))))..... ( -36.90)
>consensus
__AAUUUGAACUAUGCCAGGCACAUGUUUUGCUAGCCACUAGUUUCGGCAUGUGUCUGAGGCCAUGUCGGAAAUGCGAGCAUGUGGGUGGUGGCAUGUUGA
........(((.(((((((((....)))).((((.((((...((((((((((.((.....))))))))))))(((....))))))).)))))))))))).. (-32.13 = -32.80 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:49 2006