Locus 4582

Sequence ID X_DroMel_CAF1
Location 12,015,754 – 12,015,851
Length 97
Max. P 0.552474
window7537

overview

Window 7

Location 12,015,754 – 12,015,851
Length 97
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.60
Mean single sequence MFE -33.34
Consensus MFE -27.44
Energy contribution -27.56
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.33
Structure conservation index 0.82
SVM decision value 0.04
SVM RNA-class probability 0.552474
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12015754 97 - 22224390
GUG---AAAAGUAUG------UUUUCAAGUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAACGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC
.((---((((.....------))))))(((.((((((.((((.(((..(((((....)..))))))).)))).)))))).))).....(((((((....))))))) ( -33.30)
>DroSec_CAF1 49233 103 - 1
GUG---AAAAGUCUGCAUGCCUAUUCAACUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC
...---....(((......((((........((((((.((((.(((..(((((....)..))))))).)))).))))))((((....))))..))))......))) ( -29.90)
>DroSim_CAF1 48426 103 - 1
GUG---AAAAGUCUGCGUGCGUAUUCAAGUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC
...---...(((((..((((.......(((.((((((.((((.(((..(((((....)..))))))).)))).)))))).))).....).)))..)))))...... ( -32.60)
>DroEre_CAF1 46339 103 - 1
GUG---GAAAGUCUGCAAGCGCUGUCAGCUGGGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC
.((---(..((((....(((.......))).((((((.((((.(((..(((((....)..))))))).)))).)))))))))).))).(((((((....))))))) ( -34.80)
>DroYak_CAF1 47400 106 - 1
GUGCUGCAAAGUCUGCAUGCGCUUUCAAGUGAGCUUUACUGUACCAUCCGCCAGAAAGAAGGCGUGGAGCGACAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC
((((((((.....)))).)))).....(((.((((((..(((.(((..((((........))))))).)))..)))))).))).....(((((((....))))))) ( -36.10)
>consensus
GUG___AAAAGUCUGCAUGCGUUUUCAAGUGAGCUUUACUGUACCAUCCGCCCGAAAGAAGGCGUGGAGCGGCAAAGCUGGCUCCCAAGUCAUUAGGACUAAUGGC
...........................(((.((((((.((((.(((..((((........))))))).)))).)))))).))).....(((((((....))))))) (-27.44 = -27.56 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:43 2006