Locus 4579

Sequence ID X_DroMel_CAF1
Location 12,012,899 – 12,012,996
Length 97
Max. P 0.511727
window7531

overview

Window 1

Location 12,012,899 – 12,012,996
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 88.40
Mean single sequence MFE -22.32
Consensus MFE -18.38
Energy contribution -18.58
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.511727
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12012899 97 + 22224390
GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCGGCACUAUCUUCCUUGGGUUAAGCCCAACUGCAGCCCU-UUCACCUCCCACUUUUGCCC
...((((((...(((((((....))))))).))))))..((((...........(((((.((.....))..))))).-...............)))). ( -22.93)
>DroSec_CAF1 46412 97 + 1
GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUUUUCCUUGGGUUAAGCCCAACUGCACCCCU-UGCUCCACCCACAUUUGCCC
...((((((...(((((((....))))))).))))))...(((.........(((((.....)))))..(((.....-)))............))).. ( -23.60)
>DroSim_CAF1 45610 98 + 1
GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCUUCCUUGGGUUAAGCCCAACUGCACCCAUGUGCACCACCCACAUUUGUCC
...((((((...(((((((....))))))).))))))...((((........(((((.....)))))..........))))................. ( -25.57)
>DroEre_CAF1 43125 92 + 1
GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCU-CCCUGGGUUAAGCCCAACUGC--CCCC-UUUCCCGCCCACUCUUAC--
..((((......(((((((....)))))))..(((((((((........-..))))))...((......))--....-......))))))).....-- ( -22.20)
>DroYak_CAF1 44199 97 + 1
GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCUUCCCUCGGUUAAGCCCAACUGCACCCCC-UUCUCUGCCUACCUUUAUCC
...((((((...(((((((....))))))).))))))...(((...........(((((......))))).......-.....)))............ ( -17.30)
>consensus
GAAGUGUCAACAGCGUCGUCAUCAUGAUGCAUGGCACCCAGCACUAUCUUCCUUGGGUUAAGCCCAACUGCACCCCU_UUCACCACCCACAUUUGCCC
...((((((...(((((((....))))))).))))))................((((.....))))................................ (-18.38 = -18.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006