Locus 4575

Sequence ID X_DroMel_CAF1
Location 12,008,396 – 12,008,500
Length 104
Max. P 0.500000
window7522

overview

Window 2

Location 12,008,396 – 12,008,500
Length 104
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.33
Mean single sequence MFE -26.53
Consensus MFE -17.79
Energy contribution -17.80
Covariance contribution 0.01
Combinations/Pair 1.11
Mean z-score -1.39
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12008396 104 + 22224390
-------------UGUUAUCAUUAAUUUUCGGAUAUACAUAUGUCGGGCGAUAUUAAUUGCCCAGGGCUGAAGAUUAUCGAAUAUUCUGAUAUUGAGAUUGAGGGCGACUGCG---AAAU
-------------.((..(((.((((((((((((((....)))))(((((((....))))))).....)))))))))((.(((((....)))))))...)))..)).......---.... ( -23.70)
>DroSec_CAF1 41906 107 + 1
-------------UGUUAUCAUUAAUAUUCGGAUAUACAUAUGUCGGGCGAUAUUAAUUGCCCAGGGCUGAAGAUUAUCGAAUAUUAUGAUAUUGAGUUUGAGGGAAAUUAUUAUUGAGA
-------------...((((((.(((((((((((((....)))))(((((((....)))))))...............))))))))))))))............................ ( -25.90)
>DroYak_CAF1 41591 117 + 1
UGCUAUUUGCUAUUGCUAUCAUUAAUUUUCGGUUAUACAUAUGUCGGGCGAUAUUAAUUGCCUAGGGCUGAAGAUUAUCGAACACUCUGAUAGGAAGAUUGAAGGCGACGGGG---AAUU
....((((.(..(((((.((..((((((((((((..((....)).(((((((....)))))))..))))))))))))..)).((.(((.......))).))..)))))..).)---))). ( -30.00)
>consensus
_____________UGUUAUCAUUAAUUUUCGGAUAUACAUAUGUCGGGCGAUAUUAAUUGCCCAGGGCUGAAGAUUAUCGAAUAUUCUGAUAUUGAGAUUGAGGGCGACUGCG___AAAU
.............(((..(((.((((((((((....((....)).(((((((....)))))))....))))))))))(((.......))).........)))..)))............. (-17.79 = -17.80 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:31 2006