Locus 4574

Sequence ID X_DroMel_CAF1
Location 12,000,910 – 12,001,027
Length 117
Max. P 0.559565
window7521

overview

Window 1

Location 12,000,910 – 12,001,027
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.50
Mean single sequence MFE -23.52
Consensus MFE -16.41
Energy contribution -16.48
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.559565
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12000910 117 + 22224390
ACAUAAGCACACAUCCUUUUGUGCUGAAC---CACAAUUCUUUUACAGCGCAAGCAAUUAUUUAGAUUAAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG
.(((.(((..........((((((((...---.............))))))))((.....((((((((..........)))))))).....)).)))..))).....((((.....)))) ( -23.39)
>DroSec_CAF1 39781 118 + 1
ACAUAAGCACACAUCCUUUUGUGCUUAAC--CCACAAUUCUUUAACAGAGCAAGCAAUUAUUUAGAUUAAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG
...((((((((........))))))))..--................((((..((.....((((((((..........)))))))).....)).)))).........((((.....)))) ( -25.10)
>DroEre_CAF1 38459 112 + 1
AC--------ACAGCCUUUUGUGCAGAACAACCACAAUUCUUUUACAGAGCCAGCAAUUAUUUAGAUUAAGCAAACUAAGUCUGGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG
.(--------((((....)))))........................((((..((.....((((((((.((....)).)))))))).....)).)))).........((((.....)))) ( -20.10)
>DroYak_CAF1 39454 117 + 1
ACACAAGAACACAGCCUUUUGUGCAGAA---CCACAAUUCUUUUAGAGAGCAAGCAAUUAUUUAGAUUCAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGGUUUUCCCACACUUUGGG
.(((((((........))))))).((((---(((....((.....))((((..((.....((((((((..........)))))))).....)).))))..)))))))((((.....)))) ( -25.50)
>consensus
ACAUAAGCACACAGCCUUUUGUGCAGAAC__CCACAAUUCUUUUACAGAGCAAGCAAUUAUUUAGAUUAAACAAACUAAGUCUAGAGAUAAGCAGCUCAAUGAUUUUCCCACACUUUGGG
..................(((((.........)))))..........((((..((.....((((((((..........)))))))).....)).)))).........((((.....)))) (-16.41 = -16.48 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:30 2006