Locus 457

Sequence ID X_DroMel_CAF1
Location 1,342,123 – 1,342,235
Length 112
Max. P 0.670529
window700

overview

Window 0

Location 1,342,123 – 1,342,235
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.06
Mean single sequence MFE -36.28
Consensus MFE -30.68
Energy contribution -31.20
Covariance contribution 0.52
Combinations/Pair 1.14
Mean z-score -1.43
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.670529
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1342123 112 + 22224390
--------GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCACUCCAACGGGCGAAUUUCUCAUUUGCCUAUGCUCCUUGCCAGGAUGACGAGGAUAAUGGAGGAUAGUGGUGUGUUGGU
--------(((((((......)))))))((((((....(((.(((((..((((((((.....))))))))....((((((.(.....).))))))...))))))))....)))))).... ( -36.70)
>DroSec_CAF1 2632 112 + 1
--------GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCACUCCAACGGGUGAAUUUCUCAUUUGCCUAUUCUCCUUGCCAGGAUGACUAGGAUAAUGGAGGAUAGUGGUGUGUGGGU
--------(((((((......)))))))(((((((((((((((((....))))).))))))......(((((((((((((((((.....)).)).))).))))))))).))))))).... ( -36.20)
>DroSim_CAF1 5843 112 + 1
--------GAGAGUUUGCCAUGACUUUCACAUGCAGGAGUCACUCCAACGGGUGAAUUUCUCAUUUGCCUAUUCUCCUUGCCAGGAUGACUAGGAUAAUGGAGGAUAGUGGUGUGUGGGU
--------(((((((......)))))))(((((((((((((((((....))))).))))))......(((((((((((((((((.....)).)).))).))))))))).))))))).... ( -36.60)
>DroEre_CAF1 2637 110 + 1
--------GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCGCUCCAGCAAGCGAAAUUCUCAUUUGCCUUUGCUCCUUGCCAGGAUGACGAGGAUAAUGGAGGAUAGUCGUGUGUGG--
--------(((((((......))))))).((((((.(((((.((((((((((((((.......)))))..))))((((((.(.....).))))))...))))))))..)).)))))).-- ( -37.40)
>DroYak_CAF1 2848 120 + 1
AGCGUGGAGAGAGUUUGCCAUAACUUUCACAUGCAGAAGUUGCUCCAGCAAGCGAAGUUCUCAUUUGCCUUUGCUCCUCGCCAGGAUGACGAGGAUAAUGGAAGAUAGUGGUGUGUGGUU
.(((((..(((((((......))))))).)))))....(((..(((((((((((((.......)))))..))))((((((.(.....).))))))...)))).))).............. ( -34.50)
>consensus
________GAGAGUUUGCCAUAACUUUCACAUGCAGGAGUCACUCCAACGGGCGAAUUUCUCAUUUGCCUAUGCUCCUUGCCAGGAUGACGAGGAUAAUGGAGGAUAGUGGUGUGUGGGU
........(((((((......)))))))((((((....(((.(((((..((((((((.....))))))))....((((((.(.....).))))))...))))))))....)))))).... (-30.68 = -31.20 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:00 2006