| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,992,771 – 11,992,866 |
| Length | 95 |
| Max. P | 0.999764 |
| Location | 11,992,771 – 11,992,866 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 95.79 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -26.14 |
| Energy contribution | -25.86 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.03 |
| SVM RNA-class probability | 0.999764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11992771 95 + 22224390 CGAAAGCGAAACACGCUUUCCGCAGAGGGUAAUUGAAAUUUCUGCCAGUCAAAUUGGCGCUGUCAAGUGUCAAAAAAUGCAAUUUGCACUGCGAA .(((((((.....)))))))(((((..((((...........)))).......((((((((....))))))))....(((.....)))))))).. ( -30.50) >DroSec_CAF1 31958 95 + 1 CGAAAGCGAAACACGCUUUCCGCAGAGGGUAAUUGAAAUUUCUGGCAGUCAAAUUGGCGCUGUCAAGUGUCAAAAAAUGCAAUUUGCACUGCGAA .(((((((.....)))))))..((((((..........))))))(((((....((((((((....)))))))).....((.....)))))))... ( -29.80) >DroSim_CAF1 33222 95 + 1 CGAAAGCGAAGCACGCUUUCCGCAGAGGGUAAUUGAAAUUUCUGGCAGUCAAAUUGGCGCUGUCAAGUGUCAAAAAAUGCAAUUUGCACUGCGAA .(((((((.....)))))))..((((((..........))))))(((((....((((((((....)))))))).....((.....)))))))... ( -29.80) >DroEre_CAF1 30848 95 + 1 CGAAAGUGAAACACGUUUUCCGCAGAGGAUAAUUGAAAUUUCUGCCAGUCAAAUUGGCGCUGUCAAGUGUCAAAAAAUGCAAUUUGCACUGUGAA .(((((((.....)))))))(((((..((((.((((......(((((((...)))))))...)))).))))......(((.....)))))))).. ( -22.00) >DroYak_CAF1 31961 95 + 1 UGAAAGCGAAACACGCUUGCCGCAGAGGAUAAUUGAAAUUUCUGGCAGUCAAAUUGGCGCUGUCAAGUGUCAAAAAAUGCAAUUUGCACUGCGUA ...(((((.....)))))..(((((((((..........)))).(((......((((((((....))))))))....)))........))))).. ( -25.00) >consensus CGAAAGCGAAACACGCUUUCCGCAGAGGGUAAUUGAAAUUUCUGGCAGUCAAAUUGGCGCUGUCAAGUGUCAAAAAAUGCAAUUUGCACUGCGAA .(((((((.....)))))))(((((............................((((((((....))))))))....(((.....)))))))).. (-26.14 = -25.86 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:18 2006