Locus 4565

Sequence ID X_DroMel_CAF1
Location 11,992,112 – 11,992,227
Length 115
Max. P 0.988540
window7507

overview

Window 7

Location 11,992,112 – 11,992,227
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.46
Mean single sequence MFE -23.31
Consensus MFE -16.95
Energy contribution -18.14
Covariance contribution 1.19
Combinations/Pair 1.11
Mean z-score -3.00
Structure conservation index 0.73
SVM decision value 2.12
SVM RNA-class probability 0.988540
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11992112 115 - 22224390
-----CAAAAAACUUAUUACAUUAAAUUUAAAGUUGGCAAGUAUCUAAAAAAAAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCUUUUCUU
-----........((((..(((........(((((((((((((.((..............)).))))))))))))))))..))))........((((...(((........))))))).. ( -23.74)
>DroSec_CAF1 31341 109 - 1
-----CAA-AAACUUAUUACAUUACAUUUAAAGUUGGCAAGUAUCUAAA---AAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCGUUU--U
-----..(-((((.((((..((..(((...(((((((((((((.((...---........)).))))))))))))))))..))...((((..((.....))..)))).)))).))))--) ( -25.40)
>DroSim_CAF1 32600 109 - 1
-----CAA-AAACUUAUUACAUUAAAUUUAAAGUUGGCAAGUAUCUAAA---AAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCGUUU--U
-----..(-((((((((..(((........(((((((((((((.((...---........)).))))))))))))))))..)))).((((..((.....))..))))......))))--) ( -25.10)
>DroYak_CAF1 31338 111 - 1
AGCAACAAAAAAGAUGUUACAUGAAAUUUAAAGUAGGCAAGCAUAUAAAAAAAAUU--GAAGUCGUGUAGCAACUUGUGCGAUAAAUUCAAAUGAAAUUCAGUUGAAAAAUG-------U
.(((......(((.((((((((((..(((((.......................))--))).)))))))))).))).)))......(((((.((.....)).))))).....-------. ( -19.00)
>consensus
_____CAA_AAACUUAUUACAUUAAAUUUAAAGUUGGCAAGUAUCUAAA___AAAUAUGAAGUUGCUUGCCAACUUGUGCGAUAAAUUCAAAUGAAAUCCAGCUGAAAAAUGCGUUU__U
.............((((..(((........(((((((((((((.((..............)).))))))))))))))))..)))).((((..((.....))..))))............. (-16.95 = -18.14 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:17 2006