Locus 4564

Sequence ID X_DroMel_CAF1
Location 11,991,236 – 11,991,326
Length 90
Max. P 0.946605
window7506

overview

Window 6

Location 11,991,236 – 11,991,326
Length 90
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 91.46
Mean single sequence MFE -24.10
Consensus MFE -20.56
Energy contribution -20.76
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value 1.36
SVM RNA-class probability 0.946605
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11991236 90 - 22224390
ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU------------CGGAUCGUCCCUUUUA
...(((((....(..((((((......(((((((((((((.....)))))))))).))).))))))..)..)))------------)).............. ( -22.00)
>DroSec_CAF1 30502 89 - 1
ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU------------CGGAUCGUCCCU-UUA
...(((((....(..((((((......(((((((((((((.....)))))))))).))).))))))..)..)))------------))..........-... ( -22.00)
>DroSim_CAF1 31747 89 - 1
ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU------------CGGAUCGUCCCU-UUA
...(((((....(..((((((......(((((((((((((.....)))))))))).))).))))))..)..)))------------))..........-... ( -22.00)
>DroEre_CAF1 29423 101 - 1
ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAUCUGCAUUUGCAUUCGCAUUCGGAUUCGCAUUCGGAUCGUCCGU-UUU
..((((((....(..(((...(((((((((.(((((((((.....)))))))))..)))...(((....)))..)))))).)))..).....))))))-... ( -29.30)
>DroYak_CAF1 30605 95 - 1
ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUUCGGAC------UCGGAUCGUCCUU-UUU
.....((((..((((((..........(((((((((((((.....)))))))))).)))...(((....)))..)))))------)..))))......-... ( -25.20)
>consensus
ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU____________CGGAUCGUCCCU_UUA
...(((((((..(....)..)))))))(((((((((((((.....)))))))))).)))...(((....)))...............((.....))...... (-20.56 = -20.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:16 2006