Locus 4562

Sequence ID X_DroMel_CAF1
Location 11,988,475 – 11,988,575
Length 100
Max. P 0.906876
window7502

overview

Window 2

Location 11,988,475 – 11,988,575
Length 100
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -27.86
Consensus MFE -27.24
Energy contribution -27.28
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.30
Structure conservation index 0.98
SVM decision value 1.05
SVM RNA-class probability 0.906876
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11988475 100 + 22224390
UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------
...-.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).)))))))).------ ( -27.80)
>DroSec_CAF1 27819 100 + 1
UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------
...-.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).)))))))).------ ( -27.80)
>DroSim_CAF1 29052 100 + 1
UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------
...-.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).)))))))).------ ( -27.80)
>DroEre_CAF1 26768 100 + 1
UGC-CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCGCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU------
...-..((((((((....(((((.......(((....((((..((((((......).)))).)..)))))))...((....))...)))))))))).))).------ ( -23.90)
>DroYak_CAF1 27901 107 + 1
UGCACCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACCCAGUUGGAGUUCGCUGCUGCGUUG
.(((.((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).))))))))))).... ( -32.00)
>consensus
UGC_CCGCACGAACAUUAUCUAAAUUUUUAUGCGAAAACUUUGCUCGCCUUUUUCGAGUGUAGUGAAGUGCAAAAGGGAAACUCAGUUGGAGUUCGCUGCU______
.....((((..((.(((.....))).))..))))........(((((.......)))))((((((((.(.(((..((....))...))).).))))))))....... (-27.24 = -27.28 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:12 2006