Locus 4559

Sequence ID X_DroMel_CAF1
Location 11,986,014 – 11,986,108
Length 94
Max. P 0.873742
window7495

overview

Window 5

Location 11,986,014 – 11,986,108
Length 94
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 85.56
Mean single sequence MFE -24.44
Consensus MFE -21.01
Energy contribution -21.41
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.86
SVM decision value 0.88
SVM RNA-class probability 0.873742
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11986014 94 + 22224390
GCCGUUGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAAGUUGCAAGUUGCCCCAGCUAAAUCCAUUUCAGCCUU-----------------------CUUCUCU
((.(..(((......((((((..(..((((((((.................))))).)))..).)))))).....)))..).))...-----------------------....... ( -21.43)
>DroSec_CAF1 25365 94 + 1
GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCUAAAUCCAUUCCAGCCUC-----------------------CUUCUCC
((.((((((......((((((..(..(((((((...................)))).)))..).)))))).....)))))).))...-----------------------....... ( -25.61)
>DroSim_CAF1 25972 94 + 1
GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCCAAAUCCAUUCCAGCCUC-----------------------CUUCUCC
((.((((((.......(((((..(..(((((((...................)))).)))..).)))))......)))))).))...-----------------------....... ( -24.03)
>DroEre_CAF1 24178 94 + 1
GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCGCCAGCUAAAUCCAUACCAGCCUC-----------------------CACCUCU
...((((((......((((((.((..(((((((...................)))).)))..)))))))).....(......)....-----------------------)))))). ( -25.41)
>DroYak_CAF1 25681 116 + 1
GC-GGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCUAAAUCCAUACCAGCCUCCCAUACACCCACACUUUUUCCGCCGCCUCU
((-(((((((.....((((((..(..(((((((...................)))).)))..).))))))......))))).(.....)....................)))).... ( -25.71)
>consensus
GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCUAAAUCCAUUCCAGCCUC_______________________CUUCUCU
((.((..((......((((((..(..(((((((...................)))).)))..).)))))).....))..)).))................................. (-21.01 = -21.41 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:06 2006