| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,973,194 – 11,973,299 |
| Length | 105 |
| Max. P | 0.989046 |
| Location | 11,973,194 – 11,973,299 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.46 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -11.61 |
| Energy contribution | -12.25 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.56 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11973194 105 - 22224390 ---CCC--ACUGGAUUCAAUUAAGUUCACGAGUCUUGAGCAAUUAUUGCUGCAGACUCUCCUCG---------ACAUUUGGCCAAAAAUCAAAAACAAAAAAAAAAAAAGAAUCUGAAA ---...--...((((((............((((((..((((.....))))..))))))......---------...(((((.......)))))................)))))).... ( -19.10) >DroSec_CAF1 12811 86 - 1 ---------CUGGAUUCAAUUAAGUUCACGAGUCUUGAGCAAUUAUUGCUGCAGACUC---UCG---------ACAUUUGGCAAAAAA--------AA----AAAAAUUGAAUCUGAAA ---------..((((((((((..(((...((((((..((((.....))))..))))))---..)---------)).(((......)))--------..----...)))))))))).... ( -21.80) >DroSim_CAF1 13163 94 - 1 ---CCC--ACUGGAUUCAAUUAAGUUCACGAGUCUUGAGCAAUUAUUGCAGCAGACUC---UAG---------ACAUUUGGCAAAAAA--------AAACAAAAAAAAAGUAUCUGAAA ---.((--(.((((((......)))))).((((((...(((.....)))...))))))---...---------.....))).......--------....................... ( -13.70) >DroEre_CAF1 12318 90 - 1 CCACCC--ACUGGAUUCAAUUAAGUUCACGAGUCUUGAGCAAUUAUUGCUGCAGACUC---UCG---------GCAUUUGGCCAAAAU-CAAA-----------AA---AAAUCCGAAA ......--..((((((.............((((((..((((.....))))..))))))---..(---------((.....))).....-....-----------..---.))))))... ( -21.60) >DroYak_CAF1 12552 89 - 1 ---CCC--ACUGGAUUCAAUUAAGUUCACGAGUCUUGAGCAAUUAUUGCUGCAGACUC---UCG---------GCAUUUGGCCAAAAU-CCAA-----------AA-CAACAUCUGAAA ---...--..((((((.............((((((..((((.....))))..))))))---..(---------((.....)))..)))-))).-----------..-............ ( -22.30) >DroPer_CAF1 111180 118 - 1 -AACCCAAACAGGAUUUAAUUAAGUUUACGAAUCUUGAGCAAUUACUGUUGGAGACUCUGUUCGGGUGCUGUUGGAUUUGGACUAAAAGCAAACUGAAACAACAGAAAAAAAUACAAAA -.((((.((((((((((....)))))......((((.((((.....)))).))))..))))).)))).((((((..((..(............)..)).)))))).............. ( -25.70) >consensus ___CCC__ACUGGAUUCAAUUAAGUUCACGAGUCUUGAGCAAUUAUUGCUGCAGACUC___UCG_________ACAUUUGGCCAAAAA_CAAA___AA____AAAAAAAAAAUCUGAAA ...........((((((......(....)((((((..((((.....))))..))))))...................................................)))))).... (-11.61 = -12.25 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:57 2006