Locus 4552

Sequence ID X_DroMel_CAF1
Location 11,971,198 – 11,971,297
Length 99
Max. P 0.992226
window7484

overview

Window 4

Location 11,971,198 – 11,971,297
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 95.59
Mean single sequence MFE -23.46
Consensus MFE -19.47
Energy contribution -20.15
Covariance contribution 0.68
Combinations/Pair 1.03
Mean z-score -2.57
Structure conservation index 0.83
SVM decision value 2.31
SVM RNA-class probability 0.992226
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11971198 99 - 22224390
CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAA-ACCCCAUCAUCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC
..((((((((.......(((((((((((((((((.((((.....-....))))..(((.......))).)))))))))))))))))..)))).))))... ( -23.30)
>DroSec_CAF1 10867 96 - 1
CUCGGUGGCCUUUUGUUAAUGGUAAUCAUAAUGACGAUGCCAAA-ACCCCGU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGGUAACUGUGC
..((((.((((..((.((((((((((....((((.((((.(...-.....).---))))....))))....)))))))))).))....)))).))))... ( -21.70)
>DroSim_CAF1 10551 96 - 1
CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAA-ACCCCAU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC
..((((((((...((.((((((((((((..((((.((((.....-.......---))))....))))..)))))))))))).))....)))).))))... ( -23.00)
>DroEre_CAF1 10600 95 - 1
CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAA--ACCCCAU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC
..((((((((.......(((((((((((((((((.((((....--....)))---)....(......).)))))))))))))))))..)))).))))... ( -23.50)
>DroYak_CAF1 10491 96 - 1
CUCGUUGGC-UUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAAAACCCCAU---CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGCUAACUGUGC
...((((((-(......(((((((((((((((((.((((..........)))---)....(......).)))))))))))))))))..)))))))..... ( -25.80)
>consensus
CUCGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAA_ACCCCAU___CAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGUGC
..((((((((...((.((((((((((((..((((.((((................))))....))))..)))))))))))).))....)))).))))... (-19.47 = -20.15 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:56 2006