| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,970,765 – 11,970,865 |
| Length | 100 |
| Max. P | 0.885872 |
| Location | 11,970,765 – 11,970,865 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.87 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -15.77 |
| Energy contribution | -18.14 |
| Covariance contribution | 2.37 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11970765 100 + 22224390 AAAAUCAUAUCAAUUAUUCGGUGACCUGUCAAAGUGUCUUGAAGUGUGGUGUUUUGCCCACUUUAAGGAUCAACUUGAAU-------------------GGGCGGGGGCCGGGGAUUAA ................((((((..((((((.((((.((((((((((.(((.....)))))))))))))....))))....-------------------.)))))).))))))...... ( -34.70) >DroSec_CAF1 10414 100 + 1 AAAAUCAUAUCAAUUAUUCGGUGACUUGUCAAAGUGUCUUGAAGUGUGGC-UGCUGCCCACUUUAAGGAUCAACUGGAAU----------------AGUGGG--CGGGGCGGGGAUUAA ..((((...((.......((((.((...((((......))))...)).))-))(((((((((...((......)).....----------------))))))--)))...)).)))).. ( -28.90) >DroSim_CAF1 10099 102 + 1 AAAAUCAUAUCAAUUAUUCGGUGACCUGUCAAAGUGUCUUGAAGUGUGGC-UGCUGCCCACUUUAAGGAUCAACUGGAAU----------------AGAGGGCGCGGGGCGGGGAUUAA ..((((.((((........)))).((((((...(((((((((((((.(((-....))))))))).((......)).....----------------..)))))))..)))))))))).. ( -32.70) >DroEre_CAF1 10192 78 + 1 AAAAUCAUAUCAAUUAUUCGGUGACCUGUCAAAGUGUCUUGAAGUGUGG-----UGACCACUU------------------------------------GGGGGUGGGGCGGGGAUUAG ..((((.((((........)))).((((((....(..(((.(((((.(.-----...))))))------------------------------------.)))..).)))))))))).. ( -23.90) >DroYak_CAF1 10049 114 + 1 AAAAUCAUAUCAAUUAUUUGGUGACCUGUCAAAGUGUCUUGAAGUGUGG-----UGCCCACUUUACGGAUGAACUGUGAUGGUUGGGGUGGGAAGUGGAGGGCGGGGUGCGAGGAUUAA ..((((.((((((....)))))).((((((...(..((.........))-----..)((((((..((..(.((((.....)))).)..))..))))))..)))))).......)))).. ( -30.50) >consensus AAAAUCAUAUCAAUUAUUCGGUGACCUGUCAAAGUGUCUUGAAGUGUGG__U__UGCCCACUUUAAGGAUCAACUGGAAU_________________G_GGGCGCGGGGCGGGGAUUAA ..((((.((((........)))).((((((...(((((((((((((.(((.....)))))))))).(......).........................))))))..)))))))))).. (-15.77 = -18.14 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:55 2006