Locus 4550

Sequence ID X_DroMel_CAF1
Location 11,969,736 – 11,969,851
Length 115
Max. P 0.534092
window7482

overview

Window 2

Location 11,969,736 – 11,969,851
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 93.91
Mean single sequence MFE -21.60
Consensus MFE -18.82
Energy contribution -18.70
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.19
Structure conservation index 0.87
SVM decision value 0.00
SVM RNA-class probability 0.534092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11969736 115 - 22224390
AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCACGGAAGUUGCAAAAACAACAGCAAAUGAG
....................((...((((((...((.((.......))(.....).......))..))))))....((((((((....))))))))..........))....... ( -22.10)
>DroSec_CAF1 9096 110 - 1
AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUGUUUAGCGUUUUCUGGCACGCGAUUUCCGCGAAAGUUGCAAAAACAACAAAAA-----
.......(((((((((...((....)).......((.((.......)).))....)))))))))(((((...(((((((.....)))).....))).)))))........----- ( -22.70)
>DroSim_CAF1 9146 115 - 1
AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCGCGAAAGUUGCAAAAACAACAGCAAUUGAG
....................((...(((((((..((.((.......)).))...........((((........)))).))))))).....((((......)))).))....... ( -21.70)
>DroEre_CAF1 9297 115 - 1
AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCGCGGAAGUUGCAAAAACAGCUGUAACUGAG
......(((((........(((....((((((..((.((.......)).))...........((((........)))).)))))))))..(((((......))))).)))))... ( -23.30)
>DroYak_CAF1 9209 115 - 1
AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACACCGGCAAACAUUUUUAGCGUUUUCUGACACGCGAUUUCUGCGGAAGUUGCAAAAACAACAGCAACUGAG
....................((...((((((...((.((..........))(((....))).))..))))))....((((((((....))))))))..........))....... ( -18.20)
>consensus
AAUUUAAGUUAAACAUAAACGCAAACGGAAAUAAGCAGCAAAAACAGCGGCAAACAUUUUUAGCGUUUUCUGGCACGCGAUUUCCGCGGAAGUUGCAAAAACAACAGCAACUGAG
....................(((...((((((..((.((.......)).))...........((((........)))).))))))((....)))))................... (-18.82 = -18.70 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:54 2006